Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2390 ATGGACTGGAATATGAAGGACGCGTCATGGGATTTGGCTGAATTAGATGAAGCAACCGGCTTACCTAACATAGAAGAGACAATTGATGGGTCAAGCAGATTTGGAAGTTGTGATAGAAGTAATAAAGGGGAATTTTCTGTGGATTTGAAGCTTGGTCAGGTGGGGAATTCTAGTAGTAGTAATAATGAACCAGTAGCAGCATCAGTAGTGGCCAATAAGTGGAAAGATGTTGTTGGAGGAGTCTCCAAAGTGATGATGACGTCTTCTTCTTCGCCATCGTCTTCTCCCTCGGGATCATCTAAGAGAGCTCGAGCGATTAACAATGGAAACCAGACAGTGTCATGTCTTGTGGATGGGTGCAATTCAGATCTTAGTAATTGTAGGGACTATCACAGACGCCATAAGGTCTGTGAACTTCATTCTAAGACCCCGGTGGTCAGAATTGGCGGCCACAAGCAAAGGTTCTGTCAACAATGTAGCAGGTTTCATTCGCTGGAGGAGTTTGACGAAGGGAAGAGAAGTTGCAGGAAGCGATTAGATGGACACAACCGACGAAGGAGGAAGCCACCGCAGGCGGCGGCAGAAGGCGTTGGGGGAAGATGTGGAAGCTTTTTGTCCAATTACCAACAAGGCACCCAACACTTGTTGCCCTTCTCAAGCTCAAATTTGTATCCTTCCACTGCTGCTATGGCTCACCCTGGTTGGAATACAGATGTTAGACTTCACCACCAACATCATAATCACTTGGTTGATCACTTTCTAGGGTCTTCTCCCTCTTCGTCATCTTATACAGAAGCAAACAACAAGAAGCAGCAGCTAGCATTCTTGCAAGGTGATCACAACTTGGCAGTAACAATGGAGAACAACCAGAGTAGCAACGAGCAAGCTCTACCAGTACCACCACCACCTGCTGATTCTGTGTGCCAAACGTTTCTGAGAGCAGCGCCATTATTGCCGGCAGCTCCACTTCACCGGGGCGGCGGAGACCATCACCATGATTCTCACTGTGCTCTCTCTCTTCTGTCATCCCCACAGACGCACACAAGTGGGAGTGGTTTGAGCCAAATGGTGCAGCCTCATCATCAACAACAACGACAAGCCATCTCAATTATGCAGCAGCATCAACCCTTGGGACTGAGCCTCCATGATCATGGCCTGGAGACGGTGGACCCGGTCATGGTTCACCATGGGAGTGGCCATTCTCCGACGACTACGTATAACATGAACGAGGCTCCTCCTCTATTTCCTTTTCATTGGGACTAG 1263 0.483 MDWNMKDASWDLAELDEATGLPNIEETIDGSSRFGSCDRSNKGEFSVDLKLGQVGNSSSSNNEPVAASVVANKWKDVVGGVSKVMMTSSSSPSSSPSGSSKRARAINNGNQTVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPVVRIGGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPPQAAAEGVGGRCGSFLSNYQQGTQHLLPFSSSNLYPSTAAMAHPGWNTDVRLHHQHHNHLVDHFLGSSPSSSSYTEANNKKQQLAFLQGDHNLAVTMENNQSSNEQALPVPPPPADSVCQTFLRAAPLLPAAPLHRGGGDHHHDSHCALSLLSSPQTHTSGSGLSQMVQPHHQQQRQAISIMQQHQPLGLSLHDHGLETVDPVMVHHGSGHSPTTTYNMNEAPPLFPFHWD 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2390 420 SUPERFAMILY SBT domain 113 191 IPR036893 GO:0003677|GO:0005634
Acco04g2390 420 Pfam SBP domain 115 188 IPR004333 GO:0003677
Acco04g2390 420 MobiDBLite consensus disorder prediction 85 104 - -
Acco04g2390 420 FunFam Squamosa promoter-binding-like protein 14 106 176 - -
Acco04g2390 420 ProSiteProfiles Zinc finger SBP-type profile. 112 189 IPR004333 GO:0003677
Acco04g2390 420 Gene3D - 106 176 IPR036893 GO:0003677|GO:0005634
Acco04g2390 420 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 60 400 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2390 Acco-ChrAcco04 40533287 40536355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2390 1 277 SBP-box Gene Family AT5G50670 43.960 4.50e-61 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Acco04g2390 SBP 1.3e-30 No_clan