Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2362 ATGGAAAACATGAACTTTGTTAGAAATGGAATGAGTAGATTGCCTCCTGGTTTTCGATTCCAGCCAACAGATCAAGAACTTGTGTTTCAGTACTTGAAATGCAAGATCTTCTCCCTTACCTTGCCTGCTTCTATTATTCCTGACCTCAGTCTCTGCAACTTCGATCCTTGGGATTTACCTGGCAACAGTGACGAGGAAGAGAGGTACTTTTTCAGTCCAAAGGAAACAAAATATCGAAATGGGAATCGCATGAACAGAACAACCATCTCTGGGTATTGGAAGGCAACAGGATCAGACAAGAGAATAACTTGTTCCTCAAGAAACAACAATAACATCGTAGGCATAAGAAAAACCCTTGTTTTTTACCAAGGAAGTTCCCCAAACGGCTCTAAAACTGATTGGATCATGCACGAGTATCGCCTCGTCTCTGCTTCTTCTTCTTCTTCTTCTTCTAAGTCCGAGGAGGTCGGAGACTGGGTTCTCTGTCGAATATCCCTCAAGAAAACCAATAACAATAATGGTGGTGGTGATACGAGGAGGAGTCACGTGCAGAATAATCATAATAACAATAATAATGGACAAGAAATGGTAGGTCAACCAAGATTCTTTGACTTTACGAGGGTACAAAATCAAAACCAAAACCTTCCCGCTGCTTCAACATCCTCGTCTTGTTCAAGCTCCAATTATGGTTATGTATCAGAACAAGAAGAAACAAGTGGATATGCTGGAGCTATTTCACCTGAATCCGCGTCCCTCTCTTCTCACTGGCTTGGCCACTATACGACTAGTGGGTGTGTGACTGAGAGGTTTTGGAACAAAGGAAAGGGAAAAAGTTTCAACTTTATTCCTCTTTCTTTCTGCTTCCTCTTCGTTGAAGTAAGCAGGCGGTTATTGAAGATGATCGACTTTTCTCGCGTCCAGAAGGAGCTCGTCGAATGCGGCAAGGATGTTGAGGGTTCCGGCATCAAGCTTAACATCAAAGACGACAGCCTTGCGTACTTGATCGGAACCATTCCTGGCCCTATTGGTACTCCTTATGAAGGGGGTATTTTCAAAATTGACATTACCATACCCGATGGCTACCCCTTTGAACCTCCCAAAATGCAGTTTGCCACCAAAGTCTGGCACCCGAACATTAGCAGCCAGAGTGGAGCTATTTGCCTGGACATCTTGAAGGATCAATGGAGCCCTGCACTGACACTGAAAACCGCGATGCTCTCTGTGCAAGCCCTTCTCTCTGCTCCTGAACCTGATGATCCTCAAGATGCTGTTGTAGCACAACAGTATCTCAAAGACTACCAGACGTTTGTTGGCACCGCCCGGTACTGGACTGAAACTTTTGCCAAGGCATCATCATCTCTTGGGATTGAGGATAAGGTGAAGAAGCTGACAGAGATGGGATTCCCTGAAGCTCAGGTGAGGAGTGCTTTAGATGCTGTTGGTGGCGATGAAAACTTGGCTCTTGAAAGGCTTTGCTCTTAG 1482 0.4487 MENMNFVRNGMSRLPPGFRFQPTDQELVFQYLKCKIFSLTLPASIIPDLSLCNFDPWDLPGNSDEEERYFFSPKETKYRNGNRMNRTTISGYWKATGSDKRITCSSRNNNNIVGIRKTLVFYQGSSPNGSKTDWIMHEYRLVSASSSSSSSKSEEVGDWVLCRISLKKTNNNNGGGDTRRSHVQNNHNNNNNGQEMVGQPRFFDFTRVQNQNQNLPAASTSSSCSSSNYGYVSEQEETSGYAGAISPESASLSSHWLGHYTTSGCVTERFWNKGKGKSFNFIPLSFCFLFVEVSRRLLKMIDFSRVQKELVECGKDVEGSGIKLNIKDDSLAYLIGTIPGPIGTPYEGGIFKIDITIPDGYPFEPPKMQFATKVWHPNISSQSGAICLDILKDQWSPALTLKTAMLSVQALLSAPEPDDPQDAVVAQQYLKDYQTFVGTARYWTETFAKASSSLGIEDKVKKLTEMGFPEAQVRSALDAVGGDENLALERLCS 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2362 493 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 455 493 IPR015940 -
Acco04g2362 493 Pfam Ubiquitin-conjugating enzyme 305 443 IPR000608 -
Acco04g2362 493 CDD UBA_II_E2_UBC27_like 457 492 IPR041974 -
Acco04g2362 493 Pfam No apical meristem (NAM) protein 15 141 IPR003441 GO:0003677|GO:0006355
Acco04g2362 493 Gene3D NAC domain 23 172 IPR036093 GO:0003677|GO:0006355
Acco04g2362 493 SMART uba_6 456 493 IPR015940 -
Acco04g2362 493 MobiDBLite consensus disorder prediction 170 196 - -
Acco04g2362 493 CDD UBCc 304 444 IPR000608 -
Acco04g2362 493 SUPERFAMILY NAC domain 7 167 IPR036093 GO:0003677|GO:0006355
Acco04g2362 493 Gene3D - 448 493 - -
Acco04g2362 493 Pfam UBA/TS-N domain 457 491 IPR015940 -
Acco04g2362 493 FunFam ubiquitin-conjugating enzyme E2 27 300 451 - -
Acco04g2362 493 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 222 - -
Acco04g2362 493 SMART ubc_7 304 449 - -
Acco04g2362 493 Gene3D Ubiquitin Conjugating Enzyme 300 447 IPR016135 -
Acco04g2362 493 ProSiteProfiles NAC domain profile. 14 167 IPR003441 GO:0003677|GO:0006355
Acco04g2362 493 SUPERFAMILY UBA-like 456 493 IPR009060 GO:0005515
Acco04g2362 493 SUPERFAMILY UBC-like 305 449 IPR016135 -
Acco04g2362 493 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 375 391 IPR023313 -
Acco04g2362 493 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 301 449 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2362 Acco-ChrAcco04 40094391 40100661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2362 1 207 NAC Transcription Factor Family AT5G13180 55.300 1.01e-65 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Acco04g2362 UQ_con 6.3e-41 CL0208