Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2356 ATGGCAGCTTTTTCTCATTGCTCCTTCCTCTTGTCACCTTTCTGCGACCAACCTCTCTTAAATTCCACTCCCCACCACCACCACACTCACCATTCTTCCAACGAAACTGACACGAATCAGAGCTCCGGCATGACTGCTAACGATCATAATGAGCCTCCTTCCGTCACCAAAACACACTCTCTGCCCGCCACCGACACCTCCATGCTCGGTGTCGCTAAGAAGAAGAACAAGAACAAGAAGGAAAATCGCAGAAATGGTCCATCCAAGGAGGGTAGAGAAGGAAGAAACAAGAAACAGAAGAAGAGCATCAATGGTAATGGTGAGGTGAAACAAGAGGAAAAGGAAAAAACCACAAAAGAGCCCCCAACAGGCTATATCCATGTCAGAGCTAGGAGGGGCGAAGCAACGGACAGCCACAGCCTCGCCGAGAGGGTGAGAAGAGAGAAAATAAGTGAGAGGATGAGGATGTTGCAACGACTCGTACCTGGTTGTGAGAAGATAACTGGAAAAGCACTCGTGTTAGACGAAATCATCAATTATGTTCAGTCCCTTCAGAATCAAGTTGAGTTTTTGACGATGAAGCTTGCTTCTGTGAATCCCACCATGTTTGGAGACTTCACAATGGGACAGTATACTCTCATGGGTACACCAGAGAGATTAAACAGTGAAGCTTCGCCTCTGCTTCCACTTGTTCCACAATGCAGGAGCAATCAGGCCACAAATTTTGCTGATGATTATTCTTCAGCCACTTTTTTCCTTCAAGGAGGAAGATTAAATAATAATGTTTTTTCTTCCCTGGATGTTGTTGGAGAGTTTTGGGATGGAGCAGAAGACCAACGACAAAATTTTCCTAATCCTTGTGACTTCAATACCAACTTATGGTCCTTTCAATGTTAG 897 0.4515 MAAFSHCSFLLSPFCDQPLLNSTPHHHHTHHSSNETDTNQSSGMTANDHNEPPSVTKTHSLPATDTSMLGVAKKKNKNKKENRRNGPSKEGREGRNKKQKKSINGNGEVKQEEKEKTTKEPPTGYIHVRARRGEATDSHSLAERVRREKISERMRMLQRLVPGCEKITGKALVLDEIINYVQSLQNQVEFLTMKLASVNPTMFGDFTMGQYTLMGTPERLNSEASPLLPLVPQCRSNQATNFADDYSSATFFLQGGRLNNNVFSSLDVVGEFWDGAEDQRQNFPNPCDFNTNLWSFQC 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2356 298 FunFam Basic helix-loop-helix transcription factor 131 203 - -
Acco04g2356 298 MobiDBLite consensus disorder prediction 35 65 - -
Acco04g2356 298 Pfam Helix-loop-helix DNA-binding domain 138 185 IPR011598 GO:0046983
Acco04g2356 298 Gene3D - 131 202 IPR036638 GO:0046983
Acco04g2356 298 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 132 200 IPR036638 GO:0046983
Acco04g2356 298 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 31 215 IPR024097 GO:0006355
Acco04g2356 298 MobiDBLite consensus disorder prediction 23 142 - -
Acco04g2356 298 SMART finulus 140 190 IPR011598 GO:0046983
Acco04g2356 298 CDD bHLH_AtBPE_like 124 202 - -
Acco04g2356 298 MobiDBLite consensus disorder prediction 83 142 - -
Acco04g2356 298 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 134 184 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2356 Acco-ChrAcco04 39958212 39959737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2356 80 218 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 59.028 1.29e-48 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco04g2356 HLH 5.4e-06 No_clan