Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2350 ATGATTTCTGGAGTGAGCGGCGTCGCTTGGATGGACGAAAACAGAGAAGGAGACGACTCTACTGCTCCATCTTCATGGGCTAACGTGAACGCCAACATCAACATCGACAAAAACCAAAACCAGAGCCATTCTGGTTTTGTCCAGAACAAAGACGACATGGGTTCTCTGTGTGCTTTTAAACCCATTCTTGAAATCGATGACGATTGGTACATCGCCGCCAACAATGGCATCCATAATCAACCAGATATTATCAGAGACATCACTTTCTCTCCCAACTTCGCCGACCAAGATAATTTATTGCTGAACCCAGTGGATTCATCCTCCTCGGGTTCCCCATCTAACAACGTCTTCAACAATCTCGACCCATCTCAGCTTCCGTACTTTCTTCCTCCTCCAAAACCCACCTTACCGTCTCTTCTTAATGTCGCCTCTAGTAACAATCCTCTAGACCATGGTTTTGATGTGGGTTGCGATGTTGGGTTTCTTGAGCCTCAAGCTTCCAGCTCTAGACTTCTGCGAGGCTTCACCAATTTCAGCTCAAATAACAACAACCAGATAAGCCTTCCCAATTTATGCTCAGATCCACGAGTCCCAACGTCAGGTATATCTCAGGTAACTGATAACAGTTTCTCAGGTTTTCGGGGTTTTGATGAGGAAGGTCCTGGAAAACCGCTATTCCTCAATAGACCCAAAATTTTGAGACCCCTTGAATCATTAACTCCGTCGGGAGCGCAGCCAACTCTGTTTCAGAAGAGGTTGGCTTTTCGAAAGAAGCTAGCGAACAACAATACTGAGAGAGACGGGGGAAAGAGTGAAATCGGAGAGGGGAACGAGAAGAAGAGGAAGATGGGTAGTTGGGAAGAAATGGAAGACGCTAGCCTCGATGGGTCTGGGTTGAATTACGATTCCGATGAGTTCACTGAGAATACGACAAGGACGGAGGAGAACGGCAAGAATGGAGGAAGCAACTCGAATGTGAACAGTGCGGTTACTGGTGGTGGTAACGGTGGGGATAAGAAGGGGAAGAAGAAGGGAATGCCCGCGAAGAATTTGATGGCTGAGCGACGTCGTCGGAAGAAGCTCAATGATAGACTGTATATGTTAAGGTCCGTTGTTCCAAAGATTAGCAAGATGGACAGGGCTTCAATCCTTGGGGATGCAATTGAGTACCTTAAGGAGCTTCTGCAAAAGATCAATGACATCCATAATGAATTGGAGTCAACGCCTTCTGGCTCTTCACTGAGCACTCCTGTTCCCAGCTTTCATCCTCTGACGCCTACTCCGCCTGCATTACCTGGCCGTATAAAGGATGAACTTTGCCCTAGCTCAATGCCAAGCCCTAATGGCCAACCTGCGAGGATTGAGGTCCGGTTGCGAGAAGGAAAGGCTGTGAATATCCACATGTTTTGTGGTCGCAAGCCTGGTATCTTGCTTTCAACCATGAAGGCTATGGACAACCTTGGACTAGACATCCATCAAGCTGTTATTAGCTGTTTTAATGGATTTGCCATGGATATCTTTCGAGCTGAGCAATGGAAGGAAGGTCAGGAAGTTCTTCATCCGGAGCAAATCAAAGCAGTACTGTTGGAGTCAGCTGGCTACCATGGCGTGATCTAG 1617 0.4725 MISGVSGVAWMDENREGDDSTAPSSWANVNANINIDKNQNQSHSGFVQNKDDMGSLCAFKPILEIDDDWYIAANNGIHNQPDIIRDITFSPNFADQDNLLLNPVDSSSSGSPSNNVFNNLDPSQLPYFLPPPKPTLPSLLNVASSNNPLDHGFDVGCDVGFLEPQASSSRLLRGFTNFSSNNNNQISLPNLCSDPRVPTSGISQVTDNSFSGFRGFDEEGPGKPLFLNRPKILRPLESLTPSGAQPTLFQKRLAFRKKLANNNTERDGGKSEIGEGNEKKRKMGSWEEMEDASLDGSGLNYDSDEFTENTTRTEENGKNGGSNSNVNSAVTGGGNGGDKKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQKINDIHNELESTPSGSSLSTPVPSFHPLTPTPPALPGRIKDELCPSSMPSPNGQPARIEVRLREGKAVNIHMFCGRKPGILLSTMKAMDNLGLDIHQAVISCFNGFAMDIFRAEQWKEGQEVLHPEQIKAVLLESAGYHGVI 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2350 538 Gene3D - 338 409 IPR036638 GO:0046983
Acco04g2350 538 SMART finulus 351 400 IPR011598 GO:0046983
Acco04g2350 538 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 345 394 IPR011598 GO:0046983
Acco04g2350 538 CDD bHLH_AtAMS_like 348 417 - -
Acco04g2350 538 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 348 419 IPR036638 GO:0046983
Acco04g2350 538 MobiDBLite consensus disorder prediction 259 289 - -
Acco04g2350 538 Pfam Helix-loop-helix DNA-binding domain 352 394 IPR011598 GO:0046983
Acco04g2350 538 MobiDBLite consensus disorder prediction 313 332 - -
Acco04g2350 538 MobiDBLite consensus disorder prediction 337 351 - -
Acco04g2350 538 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 212 534 - -
Acco04g2350 538 MobiDBLite consensus disorder prediction 259 351 - -
Acco04g2350 538 FunFam BHLH transcription factor 341 409 - -
Acco04g2350 538 MobiDBLite consensus disorder prediction 406 425 - -
Acco04g2350 538 MobiDBLite consensus disorder prediction 406 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2350 Acco-ChrAcco04 39832836 39837392 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2350 48 510 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 49.687 7.57e-119 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco04g2350 HLH 2e-09 No_clan