Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2342 ATGCCTTTTGAAGTAATGGATCAGAGGGCTGTATCTGCCCCATCACGCTTCTTTGATGACCTTTCCTTTTGCTCCGAGAAGAATGCCGGATTGCAGAGGCCAAAATCTATTCATGACCACTGCCATCAAGGAAAGAATAGAATGGCAGCATCACCCGGCAGCATTTTGAATGCTTTGTCACCTCGAGAAATTAGTGCAAAGACTAGTTGGTCAAAGTCACCAACAGGTCTGTCTGGTGAAGAAGGCAGTGTTGATATGTTTAAAGCCTCCAAGGAAGCATTAAATCATCATCCCAGATCTCAGTCCAACGCCCGTATGCAGCCAGCACCTAACCCATATGGTTTAATTGGCAATAGGATCATCACTAATGCTGCCTCACGTGAAAGTAGTTTATTCTCAAGCTCACTGTCTGAGATATTTACCCGGAAGATGAGGTTAACGGAAAGTGATGTTCTGCCTCAACAGCCTTTTACTGTTGGTTCGCTTCCTGAGGAGGAACCATTCAAATCTCTTGAAGAAATTGAGGCTGAAACTATTGGAAATCTCCTTCCTGATGAAGATGATCTATTTTCTGGTGTCACTGATGACTTAGGATTCAATACTCTTGCCAAAACTGGTGATGACCTGGAAGATTTTGATCTGTTTAGCAGTGGTGGAGGCATGGAGCTGGAAGGCAATGAACATCTAACTTCAGGGAAAAGAACCAGTGGTTCACATGGAGATCCTGGTTGCTTTGGAGGCTTCAAAGGGAAACTTCCTTTTGGTGAACATCCTTCTAGAACACTTTTTGTTAGAAACATCAACAGCAATGTTGAAGATTCTGAGCTGAAGGCTCTCTTTGAGCAATATGGTGATGTCCGAACCACCTATACTGCTTGCAAGCATCGTGGATTTGTTATGATTTCTTATTATGATATAAGATCTGCACAAAAAGCAATGAAAGCTCTTCAAAACAAGTCATTGAGGTCTAGGAAACTTGACATACATTATTCGATACCAAAGGTCAATTCTCCAGAGAAGGATATTAGCCATGGTACATTGCTTCTATCTGGTCTTGATTCTTCTGTTTCACAAGATGAACTTCTACAAATTTTTGGATTTTATGGAGAAATAAAAGAAATTTACCAATCTCCAGAAACGAATTATGACAAATTTATAGAGTTTTATGATGTGCGAGCTGCTGAAGCTGCTCTTCATGCTTTGAACAAGAGTGAAATTGCTGGGAATCAGATCAAGCTTGAACCCGGCCATCCTAGGGGTTCAAGTGCAACAAGTTTGATGCAGCAGTCTCAGAAGGGGCAGAATGAGTTTGATCTTAGTCAGAGTATAGGTGACAACTTATCACTAAGCCAGAGTGCAATAACGTCTTCTGGAGTAATTGCATCTGGTTGCCTGGACAATGGATCTGATCATGGGTTTCCAGCAGCAATACGACAAACCATGGATACCTTACCAACGAGTGTATTGCCTTATGTGAATTCTAGCATTCACAACACTGTGAGAGGGCCATCAATTCCTAAATTCCATCCTCATTCCCTCCCTGAGTATCACGATGGTTTAGCTTGTGGCAGTCCTTACAACTTTTCAAGAACCTTTAGCAATGTATCTGGCAATATGGGTCCAGGAGTGACAGATAGCTCTGACAGCAGGCACTCTCTGGGATTTGGTTCACCTGGTAAATTGACAGACTTTAATGGAGGAGGAAATGGGAGCCTTCCTAATCATGGGCTTTATCACATGTGGAGCGGATCGAATTTGCCCCAGCAAACTCCACCAGGTCCAATGGTTTGGCAGAAAACACCGTCATTTGGTAATGGTGCGTGTGCTCCTTGTCTTCAACAGATGCCTGGCTTTCCCAGATCACCATCTCATATGATGAGAGCATCACATATAGATCACCACATCGGTTCAGCACCGGTTGTTACCGCTTCCCCATGGGATAGACGGCATTCTTATTTGGCAGAGTCCCCTGATTCCTCTGGTTTTCACATGGGTTCTCTTGGTAGTACAGGTTTTCCTGGTACATGGCAATTGCATCCTCCTGAATTTTCGTCTCACAAAATGTTTCCTCATGTTGGTGGGAATGGCTTGGATTTGTCAACCAATACTGGGCAGAGCTCCCCAAATCAGTTATCACATGTTTTCCCTGGGAGACATCCCTTGACCTCAATGTCTAAATTTGATTCTACCAGTGACAGAATGAGAAACTTCTATCACCGTAGAAGCGACGCTAACACTAACAGTGCTGACAAAAAGCTATTTGAACTTGACCTAAGTCGCATATTGAACGGAGAAGACACACGAACAACACTTATGATTAAGAATATACCCAACAAGTATACTTCAAAAATGCTTCTTGCTGCCATAGATGAGCAATGTCGGGGAACTTATGACTTTTTGTATTTGCCAATTGACTTCAAGAACAAATGCAATGTTGGCTATGCTTTCATTAACATGACTGATCCTAGTCAGATTATTCCCTTCCACAAGGCTTTTAATGGGAAAAAATGGGAGAAGTTCAACAGTGAAAAGGTGGCTTCGCTTGCCTATGCTCGAATCCAGGGAAAAACTGCTCTTATTGCACATTTCCAAAATTCGAGCCTGATGAATGAAGATAAACGTTGCCGCCCTATTCTCTTTCACACTGAGGGACCAAATGCCGGTGATCCGGAGCCTTTCCCCATGGGCTCAAATATAAGATTGAGGCCTGGAAAATCGCGCGCTAGGAGCCCACCAGCTTTGACTAATGGAGAGGAGTTTTCCAGTGGAATAAGTTCTTCAATGGGCTCTTCAAAACACTCAGACTGA 2808 0.4309 MPFEVMDQRAVSAPSRFFDDLSFCSEKNAGLQRPKSIHDHCHQGKNRMAASPGSILNALSPREISAKTSWSKSPTGLSGEEGSVDMFKASKEALNHHPRSQSNARMQPAPNPYGLIGNRIITNAASRESSLFSSSLSEIFTRKMRLTESDVLPQQPFTVGSLPEEEPFKSLEEIEAETIGNLLPDEDDLFSGVTDDLGFNTLAKTGDDLEDFDLFSSGGGMELEGNEHLTSGKRTSGSHGDPGCFGGFKGKLPFGEHPSRTLFVRNINSNVEDSELKALFEQYGDVRTTYTACKHRGFVMISYYDIRSAQKAMKALQNKSLRSRKLDIHYSIPKVNSPEKDISHGTLLLSGLDSSVSQDELLQIFGFYGEIKEIYQSPETNYDKFIEFYDVRAAEAALHALNKSEIAGNQIKLEPGHPRGSSATSLMQQSQKGQNEFDLSQSIGDNLSLSQSAITSSGVIASGCLDNGSDHGFPAAIRQTMDTLPTSVLPYVNSSIHNTVRGPSIPKFHPHSLPEYHDGLACGSPYNFSRTFSNVSGNMGPGVTDSSDSRHSLGFGSPGKLTDFNGGGNGSLPNHGLYHMWSGSNLPQQTPPGPMVWQKTPSFGNGACAPCLQQMPGFPRSPSHMMRASHIDHHIGSAPVVTASPWDRRHSYLAESPDSSGFHMGSLGSTGFPGTWQLHPPEFSSHKMFPHVGGNGLDLSTNTGQSSPNQLSHVFPGRHPLTSMSKFDSTSDRMRNFYHRRSDANTNSADKKLFELDLSRILNGEDTRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMTDPSQIIPFHKAFNGKKWEKFNSEKVASLAYARIQGKTALIAHFQNSSLMNEDKRCRPILFHTEGPNAGDPEPFPMGSNIRLRPGKSRARSPPALTNGEEFSSGISSSMGSSKHSD 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2342 935 MobiDBLite consensus disorder prediction 411 437 - -
Acco04g2342 935 CDD RRM3_MEI2_like 771 856 IPR034454 -
Acco04g2342 935 SMART rrm1_1 770 846 IPR000504 GO:0003723
Acco04g2342 935 SMART rrm1_1 346 414 IPR000504 GO:0003723
Acco04g2342 935 SMART rrm1_1 261 329 IPR000504 GO:0003723
Acco04g2342 935 Gene3D - 338 425 IPR012677 -
Acco04g2342 935 SUPERFAMILY RNA-binding domain, RBD 257 419 IPR035979 GO:0003676
Acco04g2342 935 PANTHER RNA RECOGNITION MOTIF-CONTAINING 98 909 - -
Acco04g2342 935 MobiDBLite consensus disorder prediction 915 935 - -
Acco04g2342 935 Pfam RNA recognition motif 2 768 864 IPR007201 -
Acco04g2342 935 FunFam MEI2-like protein 5 isoform 2 249 343 - -
Acco04g2342 935 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 260 333 IPR000504 GO:0003723
Acco04g2342 935 MobiDBLite consensus disorder prediction 880 935 - -
Acco04g2342 935 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 262 326 IPR000504 GO:0003723
Acco04g2342 935 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 348 412 IPR000504 GO:0003723
Acco04g2342 935 CDD RRM1_MEI2_like 259 334 IPR034453 -
Acco04g2342 935 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 345 418 IPR000504 GO:0003723
Acco04g2342 935 MobiDBLite consensus disorder prediction 421 437 - -
Acco04g2342 935 Gene3D - 254 337 IPR012677 -
Acco04g2342 935 SUPERFAMILY RNA-binding domain, RBD 770 854 IPR035979 GO:0003676
Acco04g2342 935 FunFam Protein MEI2-like 1 344 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2342 Acco-ChrAcco04 39706098 39712015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2342 255 431 Eukaryotic Initiation Factors Gene Family AT3G16380 23.737 1.96e-07 52.8