Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2338 ATGCTTGAACTCGTAGTAGAGAATGTTTGGGCCCTCAGGATGCGACTCTACAGACACAAGCTTATCGTAGGGGTAGCACCAGTATGGCAAATCATTGCATTCTGCGATCGTGTAGGGAAGGTAGACAAAGTGGATCGAAATCATGGAAAGAGATCAGGTGGTTCCGAAGAAGCGCAAGAGAAAGAAGAAGAACACTTGTTCCCAATCTACTCCGATCGATCTCAGCAAGATATGTCGGCCATGGTTTCTGCTCTTGCTCAGGTCATTGGAGCTTCACCTAATGTTACTGATCATCACAACCCTTTGACTGATCATATGTCTCACTCAACTTCTGAACCTAACGCTCAACCATCTCTTCAACATCATCATCAAGGGAGCACAAGGAAGAGGCACTACAGAGGAGTAAGGCAAAGGCCATGGGGGAAATGGGCGTCTGAGATTCGTGATCCGAAGAAAGCTGCCAGAGTTTGGCTCGGAACATTTGACACGGCGGAGGCAGCCGCCGTTGCCTATGATGAAGCCGCTCTCAGATTCAAAGGAAGCAAAGCTAAGCTCAACTTCCCTGAAAGAGTTCAACTTCAACCACCTCCTTCCATGACAACAACGACGTCGTTTCCTTCTTCTTCAGGTGAATTTTCTTTCATCACAAATCCTCCTCATCATCATCAACAACCACCACTTGTTCTTGCTCCTCCCACAACAACCTTGGCTTCACAACAACCTTATTATTATCATAATAACCAATATTATCAATATCAACATGTTCCGGCAAGTGGTGGTTGGAGTCACGATATGTTTTATTCTCCTCATCAACAACAACCACCTTCCTCGTTTTCCTCGTCTGGAATGTCCCACGACCAACATGAACAAGAACAACAACAACTACAATTTTCCATGCAATTCGGAGGGTCCTCCTCTTCTACTTCTCATCCACCTTCCAATTGGCCATATCACGATTTTGATGCTAAACCTTGA 975 0.4544 MLELVVENVWALRMRLYRHKLIVGVAPVWQIIAFCDRVGKVDKVDRNHGKRSGGSEEAQEKEEEHLFPIYSDRSQQDMSAMVSALAQVIGASPNVTDHHNPLTDHMSHSTSEPNAQPSLQHHHQGSTRKRHYRGVRQRPWGKWASEIRDPKKAARVWLGTFDTAEAAAVAYDEAALRFKGSKAKLNFPERVQLQPPPSMTTTTSFPSSSGEFSFITNPPHHHQQPPLVLAPPTTTLASQQPYYYHNNQYYQYQHVPASGGWSHDMFYSPHQQQPPSSFSSSGMSHDQHEQEQQQLQFSMQFGGSSSSTSHPPSNWPYHDFDAKP 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2338 324 PANTHER DNA-BINDING DOMAIN 90 288 IPR044808 GO:0003700|GO:0009873
Acco04g2338 324 FunFam Ethylene-responsive transcription factor 2 130 189 - -
Acco04g2338 324 SUPERFAMILY DNA-binding domain 131 189 IPR016177 GO:0003677
Acco04g2338 324 MobiDBLite consensus disorder prediction 192 227 - -
Acco04g2338 324 PRINTS Ethylene responsive element binding protein signature 132 143 IPR001471 GO:0003700|GO:0006355
Acco04g2338 324 PRINTS Ethylene responsive element binding protein signature 154 170 IPR001471 GO:0003700|GO:0006355
Acco04g2338 324 SMART rav1_2 131 194 IPR001471 GO:0003700|GO:0006355
Acco04g2338 324 ProSiteProfiles AP2/ERF domain profile. 131 188 IPR001471 GO:0003700|GO:0006355
Acco04g2338 324 MobiDBLite consensus disorder prediction 193 220 - -
Acco04g2338 324 MobiDBLite consensus disorder prediction 265 314 - -
Acco04g2338 324 Pfam AP2 domain 131 180 IPR001471 GO:0003700|GO:0006355
Acco04g2338 324 MobiDBLite consensus disorder prediction 265 324 - -
Acco04g2338 324 Gene3D AP2/ERF domain 130 190 IPR036955 GO:0003700|GO:0006355
Acco04g2338 324 MobiDBLite consensus disorder prediction 123 137 - -
Acco04g2338 324 MobiDBLite consensus disorder prediction 96 122 - -
Acco04g2338 324 CDD AP2 131 189 IPR001471 GO:0003700|GO:0006355
Acco04g2338 324 MobiDBLite consensus disorder prediction 96 137 - -
Acco04g2338 324 MobiDBLite consensus disorder prediction 44 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2338 Acco-ChrAcco04 39641071 39644840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2338 48 206 AP2-EREBP Transcription Factor Family AT5G61890 58.282 2.06e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco04g2338 AP2 4.6e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g2338 04 39641071 39644840 Acco04g2338 04 39641071 39644840 ECH
Acco04g2338 04 39641071 39644840 Acco02g0803 02 5696340 5698285 ECH