Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2306 ATGTCAAGTTTTAGAGTAGGTGGCAAAGTGGTGGATAAAGTTGAGTTATTGAGGAAGAGGCATTTGCCATGGCGCTTGGACGTTTGGCCTTTCGTTATTATATATGCCCTGTGGCCAACAACTATTCTTCCCAGCCTTGACTTTGTGGATGCTGCCATTGTATTGGGTGGCCTTGTAGCTCTTCACATTCTGTTTTGGTTGTTCACGGTTTGGTCGGTTGATTTCAAATCTTTTGCCCACTACAGCAAGGTTAAAAGTATTCACGATGCAGATGCATGCAAAGTAACACCAGCTCAGTTTTCAGGTTCTAAAGAAGTGGTTCCACTTAAATTTCGAAAAACAGCTGGAGTTTCTTCATCGCAGGTGGATTCAGAAGAGATTTACTTTGACTTCAGAAAACAACATTTTGTCTATTCAAAGGAGAATGGAACATTTTGCAAGCTTTCTTACCCTACCAAGGAAACATTTGGATATTATCTCAAAAGTACTGGCCATGGCACTGAAGCTAAAGTTCTTGCTGCCACCGAGAAATGGGGCCGCAACATATTCGATTATCCTCAACCTACATTTCAGAAATTGTTGAAAGAGAACTGCATGGAGCCTTTTTTTGTCTTTCAGGTTTTCTGTGTGGGTCTCTGGTGCTTGGATGAATATTGGTATTACAGTTTGTTTACTCTATTTATGCTGTTCATGTTTGAGTCAACTATGGCAAAAAGCCGGCTGAAGACTTTAACTGAGTTGAGACGTGTTAGTGTTGATAGTCAGAACTTAATGGTACATCGCTGTGGCAAATGGGTAAAACTCTCTGGCACCGATCTCTTGCCTGGGGATGTTGTATCCATTGGACGCTCTTCAGGTCAGAATGGTGAAGAGAAGTCTGTACCTGCAGACATGCTTATATTGGCTGGAAGTGCTATTGTAAATGAAGCAATTCTCACTGGCGAGTCTACCCCTCAATGGAAGGTTTCAATTGCTGGTAAAGGCATCGAGGAGAAGTTGTCTGCAAGGCGAGATAAAAGCCATGTATTATTTGGTGGGACTAAAATTTTGCAGCACACTCCTGACAAGACTTTTCCACTGAAAACACCTGATGGCGGCTGCTTGGCTGTTGTTCTAAGAACGGGATTTGAAACTAGTCAAGGAAAGCTGATGCGGACAATCTTATTCTCTACCGAAAGGGTGACTGCCAATAGCTGGGAAAGTGGGCTGTTCATTTTATTCTTGGTTGTGTTTGCTTTAGTAGCTGCTGGTTATGTACTTGTTAAGGGTTTGGAAGATCCCACGAGGAGCAAGTATAAGCTTATACTAAGCTGTTCACTTATCATCACTTCTGTGATACCTCCTGAATTACCCATGGAATTGTCAATAGCAGTTAATACTTCCCTAATTGCCCTGGCTCGGCATGGAATATTTTGTACAGAACCTTTCAGAATACCATTTGCTGGGAAGGTTGACCTATGTTGTTTTGACAAGACTGGAACACTTACCTCTGATGACATGGAGTTTTCTGGAGTTGTTGGTGTGGCTGGGTCTACAGAATTAGAATCTGATGTGAATAAAGTGCCTGCACGTACTGTTGAAATTCTGGCTTCTTGTCATGCATTAGTGTTTGTTGATAATAAGCTGGTTGGTGATCCTCTTGAGAAGGCAGCACTAAAGGGAATAGATTGGAGTTATAAATCTGATGAGAAGGCTGTTCCAAAAAGGGGGAATGGCAATCCTGTCCAAATTGTTCAGCGACACCATTTTGCATCTCACTTAAAACGAATGGCAGTAGTTGTTCGCATTCAAGAGGAGTTTTTGGCCTTTGTGAAGGGTGCCCCAGAAATTATTCAAGATAGGCTTACTGATGTACCACCATCATATGTTGAAACTTTCAAAAGATATACACGTCAGGGATCTCGTGTTCTTGCCCTTGCTTATAAGTCTCTTCCTGACATGACAGTCAGTGAAGCGAGAGGCTTGGACAGGGATGTAGTGGAGAGTGAACTTACTTTTGCGGGCTTTGTGGTATTCAATTGCCCTATTAGATCGGATTCAGCCTCAATTTTATCTGAATTGAAAGGATCATCACATGACCTGGTCATGATTACTGGTGATCAAGCTTTAACTGCTTGTCATGTTGCTAGTCAAGTTCATATAATATCAAAACCGACATTAATTCTTAGTCCAGCAAGTAATGGTGAATATAAATGGATGTCTCCGGATGAGTCTGAAATAGTCCCCTACAGTGTGAGAGAGGTTGAATCTTTATCAGAGACTCATGATCTCTGCATTGGCGGTGATTGCATTGAGATGTTGCAACAAACTTCTGCTACTCTACTGGTCATTCCATACGTGAAGGTGTTTGCTAGAGTGGCTCCTGAACAGAAAGAACTTATCATGACCACTTTCAAAAAAGTAGGAAGGGTAACTTTGATGTGTGGAGATGGAACAAATGATGTAGGAGCTTTGAAGCAGGCCCATGTAGGAGTTGCTCTTCTGAATGCTTTGCCTCCACCTCAAAGTGGAAGCTCCTCTTCGGACTCAGCTAAGGAAGATGGTACAAAGTCTAGCAAGCCAAAGAAAGCTAAGTCTGCACTTGATTCATCTGGAAAACCTGCTGGCTCTAGTGGAGAAGGCACTTCAAAATCTAAACGATCTGATTCCATTAGCCACCCAAGTAACCGTCATCTGACAGCAGCAGAAATTCAAAGACAAAAACTTAAGAAAATGATGGATGAGCTTAATGAGGAAGGAGATGGTCGCTCTACTCCAGTAGTGAAGCTTGGTGATGCCTCAATGGCATCCCCTTTCACTGCAAAGCACGCATCTGTTGCTCCCACCACCGACATAATTCGTCAAGGTCGCAGTACTCTAGTGACTACCCTCCAGATGTTCAAAATTCTTGGCCTCAACTGCCTTGCTACTGCTTATGTGTTGAGTGTCATGTACCTGGATGGAGTCAAGCTTGGTGATGTGCAAGCCACAATTAGCGGGGTGTTTACTGCCTCCTTCTTCCTTTTCATCTCACATGCTCGCCCTCTTCCCACACTTTCAGCTGAACGTCCTCACCCCAATGTCTTCAGTGCTTATCTCCTTCTTTCTCTCTTGGGACAATTTGCAATTCACCTGTTTTTTCTTATTTCTTCGGTAAGAGAGGCCGAGAAGCACATGCCCGAGGAATGCATCGAAGTAGATTCTGAATTTCATCCCAACCTGGTGAATACTGTTTCCTACATGGTGAGCATGATGCTTCAGGTGGCCACTTTTGCTGTGAACTATATGGGTCATCCTTTCAACCAGAGCATCTCTGAAAACAAACCATTCCGGTACGCCCTTGTCGCCGCTGTCATCTTCTTCACGGTAATCACGTCGGATCTCTTCAGAGCCTTGAATGACTGGTTGAAGCTGGTTCCACTGCCAGAGGGATTAAGGGATAAACTGTTGATTTGGGCTGCTCTTATGTTCTTGGCCTGCTATTCATGGGAGAGACTATTAAGGTGGGCTTTCCCTGGTAAAATTCCGGCTTGGAAGAAGCGTCAACGTCTTGCCGCAACTAGCCTGGAAAAGAAGAAACAGGTCTGA 3567 0.4348 MSSFRVGGKVVDKVELLRKRHLPWRLDVWPFVIIYALWPTTILPSLDFVDAAIVLGGLVALHILFWLFTVWSVDFKSFAHYSKVKSIHDADACKVTPAQFSGSKEVVPLKFRKTAGVSSSQVDSEEIYFDFRKQHFVYSKENGTFCKLSYPTKETFGYYLKSTGHGTEAKVLAATEKWGRNIFDYPQPTFQKLLKENCMEPFFVFQVFCVGLWCLDEYWYYSLFTLFMLFMFESTMAKSRLKTLTELRRVSVDSQNLMVHRCGKWVKLSGTDLLPGDVVSIGRSSGQNGEEKSVPADMLILAGSAIVNEAILTGESTPQWKVSIAGKGIEEKLSARRDKSHVLFGGTKILQHTPDKTFPLKTPDGGCLAVVLRTGFETSQGKLMRTILFSTERVTANSWESGLFILFLVVFALVAAGYVLVKGLEDPTRSKYKLILSCSLIITSVIPPELPMELSIAVNTSLIALARHGIFCTEPFRIPFAGKVDLCCFDKTGTLTSDDMEFSGVVGVAGSTELESDVNKVPARTVEILASCHALVFVDNKLVGDPLEKAALKGIDWSYKSDEKAVPKRGNGNPVQIVQRHHFASHLKRMAVVVRIQEEFLAFVKGAPEIIQDRLTDVPPSYVETFKRYTRQGSRVLALAYKSLPDMTVSEARGLDRDVVESELTFAGFVVFNCPIRSDSASILSELKGSSHDLVMITGDQALTACHVASQVHIISKPTLILSPASNGEYKWMSPDESEIVPYSVREVESLSETHDLCIGGDCIEMLQQTSATLLVIPYVKVFARVAPEQKELIMTTFKKVGRVTLMCGDGTNDVGALKQAHVGVALLNALPPPQSGSSSSDSAKEDGTKSSKPKKAKSALDSSGKPAGSSGEGTSKSKRSDSISHPSNRHLTAAEIQRQKLKKMMDELNEEGDGRSTPVVKLGDASMASPFTAKHASVAPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDVQATISGVFTASFFLFISHARPLPTLSAERPHPNVFSAYLLLSLLGQFAIHLFFLISSVREAEKHMPEECIEVDSEFHPNLVNTVSYMVSMMLQVATFAVNYMGHPFNQSISENKPFRYALVAAVIFFTVITSDLFRALNDWLKLVPLPEGLRDKLLIWAALMFLACYSWERLLRWAFPGKIPAWKKRQRLAATSLEKKKQV 1188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2306 1188 SUPERFAMILY Calcium ATPase, transmembrane domain M 160 1165 IPR023298 -
Acco04g2306 1188 Pfam E1-E2 ATPase 257 468 - -
Acco04g2306 1188 FunFam Cation-transporting ATPase 226 388 - -
Acco04g2306 1188 PRINTS P-type cation-transporting ATPase superfamily signature 308 322 - -
Acco04g2306 1188 PRINTS P-type cation-transporting ATPase superfamily signature 488 502 - -
Acco04g2306 1188 PRINTS P-type cation-transporting ATPase superfamily signature 690 700 - -
Acco04g2306 1188 PRINTS P-type cation-transporting ATPase superfamily signature 808 827 - -
Acco04g2306 1188 FunFam Cation-transporting ATPase 669 843 - -
Acco04g2306 1188 FunFam Cation-transporting ATPase 484 668 - -
Acco04g2306 1188 Pfam haloacid dehalogenase-like hydrolase 484 713 - -
Acco04g2306 1188 Coils Coil 892 912 - -
Acco04g2306 1188 ProSitePatterns Hypothetical cof family signature 2. 808 830 - -
Acco04g2306 1188 MobiDBLite consensus disorder prediction 829 895 - -
Acco04g2306 1188 SUPERFAMILY HAD-like 483 833 IPR036412 -
Acco04g2306 1188 CDD P-type_ATPase_cation 170 1103 IPR047820 -
Acco04g2306 1188 SFLD C1.7: P-type atpase like 469 951 - -
Acco04g2306 1188 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 494 678 IPR023299 GO:0000166
Acco04g2306 1188 Gene3D - 483 668 IPR023299 GO:0000166
Acco04g2306 1188 ProSitePatterns E1-E2 ATPases phosphorylation site. 490 496 IPR018303 -
Acco04g2306 1188 Gene3D - 224 388 - -
Acco04g2306 1188 MobiDBLite consensus disorder prediction 846 860 - -
Acco04g2306 1188 NCBIfam HAD-IC family P-type ATPase 403 509 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Acco04g2306 1188 NCBIfam HAD-IC family P-type ATPase 780 827 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Acco04g2306 1188 NCBIfam P-type ATPase of unknown pump specificity (type V) 45 1145 IPR006544 GO:0006812|GO:0016020|GO:0019829|GO:0140358
Acco04g2306 1188 MobiDBLite consensus disorder prediction 864 878 - -
Acco04g2306 1188 SUPERFAMILY Calcium ATPase, transduction domain A 256 387 IPR008250 -
Acco04g2306 1188 SFLD p-type atpase 469 951 IPR044492 -
Acco04g2306 1188 PANTHER CATION-TRANSPORTING ATPASE-RELATED 12 1164 IPR006544 GO:0006812|GO:0016020|GO:0019829|GO:0140358
Acco04g2306 1188 Gene3D - 669 843 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2306 Acco-ChrAcco04 39318516 39328212 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2306 1 1188 Primary Pumps ATPases AT5G23630 79.261 0.0 1934