Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2301 ATGGGCCGATCTCCTTGCTGCGAGAAACAACACACTAACAAGGGTGCTTGGACCAAAGACGAAGACCAACGTCTCATTAATTACATCTCCCTCAACGGCCAAGGCTCCTGGCGTTCCCTCCCTAAAGCCGCCGGTTTGATGAGATGTGGGAAAAGTTGCAGGCTGAGATGGATTAACTATCTGAGGCCTGATCTTAAGAGAGGCAATTTTTCTCAGGAGGAAGATGATCTTATTATTAACCTTCACAGCTTACTCGGCAACAAGTGGTCTTTAATCGCGGCTAGGTTACCGGGTCGAACTGATAATGAGATCAAGAACTACTGGAACACCCACGTCAAGCGCAAACTCTACAGCCTCGGAATCGACCCTCAAACCCACCGTCCACTCACCTCCGCCGCCTCGACAACCACCACCACTCCGGCGACCACCAGCGGTACTATCAAGAGAAGAACCAGTAACAGCCAAAATAATAACCCTAAACTCAAGCCAGTCTCATCATCAGGGGAAGATTCAAATAGCAATAGCAGCAGCGGGATTACCACAGACGAATCAGCCAATTCTGATAATGATAATCATAATAATCACCAACTCATCAACTTGGAGCTCTCCATAGGTCTCCCTGCTTCCTCCAACGACAATAAAACCCTCGTCGTTCACCCCTCTGATGCAGTCTCAGACGACAAGTTATTAAAACGACAACGACGTGATGATAATAAAGAAGTGTGTTTGTGTTGCAGTTTAGGGTTTCAGAGCGTCGTTGGTGTTGGTGGTAATAATCAAGCATGTAGGTGCAAGGCCATGATCAGAAATACTTGTTCAGTTATTACTACTGCACCTACTTCTTCTTCTGCTGCTGCTGCTTCCGATTCTTCAGACATTAACGTTTACAGTTTTTCACTCCCTTAA 906 0.4647 MGRSPCCEKQHTNKGAWTKDEDQRLINYISLNGQGSWRSLPKAAGLMRCGKSCRLRWINYLRPDLKRGNFSQEEDDLIINLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHVKRKLYSLGIDPQTHRPLTSAASTTTTTPATTSGTIKRRTSNSQNNNPKLKPVSSSGEDSNSNSSSGITTDESANSDNDNHNNHQLINLELSIGLPASSNDNKTLVVHPSDAVSDDKLLKRQRRDDNKEVCLCCSLGFQSVVGVGGNNQACRCKAMIRNTCSVITTAPTSSSAAAASDSSDINVYSFSLP 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2301 301 CDD SANT 69 112 IPR001005 -
Acco04g2301 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Acco04g2301 301 CDD SANT 16 61 IPR001005 -
Acco04g2301 301 MobiDBLite consensus disorder prediction 124 193 - -
Acco04g2301 301 Gene3D - 14 66 - -
Acco04g2301 301 SMART sant 66 114 IPR001005 -
Acco04g2301 301 SMART sant 13 63 IPR001005 -
Acco04g2301 301 FunFam Transcription factor MYB7 69 163 - -
Acco04g2301 301 Gene3D - 69 116 - -
Acco04g2301 301 MobiDBLite consensus disorder prediction 123 193 - -
Acco04g2301 301 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 200 - -
Acco04g2301 301 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Acco04g2301 301 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Acco04g2301 301 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Acco04g2301 301 FunFam MYB-related transcription factor 13 66 - -
Acco04g2301 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Acco04g2301 301 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Acco04g2301 301 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2301 Acco-ChrAcco04 39233680 39234975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2301 1 210 MYB Transcription Factor Family AT4G09460 58.411 1.87e-85 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco04g2301 Myb_DNA-binding 4.8e-13 CL0123