Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2292 ATGGTGGATTCAAGCGTCCAGGCCTCAGCTAGCAGCTATTGGATTACATGTTTCTCTGTTTTTCCCTTTCTCCAAGGAAGCAGGAAGTCTTCATCTGAAATTTTCTTGGACATCAAAGAGCCTAATAACAACATGCTTGGCCCAAAATTGATTGGGGATACTCTGAAATTAATGACAAGGTTACTGCTATTCCTCAGTGTCCTGAGACTCAGTTCTGCAACCAAAGATCCTGACGTGGAAGGTGAAGCTTTGTTTCAAGTTAGGCAGGCTCTCCATGATCCCCTCCATCAATTAACCGATTGGAATTATTTTTTTGTGTCTGCATGCGTTAGTTGGTCCCATGTCACTTGTAGAAACGGACACGTTATAGCCCTGAGCCTGGCTACATATGAACTTTCTGGAACAATATCTCCTTCAATAACCAGATTGAAATATTTGTCTAGCTTGGAGTTGCAGAACAACAAATTCTCAGGCCCGTTACCTGATTATATTGCCAATTTGACACAACTTCAATATCTCAATCTTGGAGACAATCATTTTAGTGGTTCTATTCCAGCTAGCTGGGGCAAGCTTCAAAATCTAAAGAACCTGATCTTGAGAGGGAATGATTTATCCGGACCTGTATCAGACATGCTCGCTAATATTAGTGGATTGGCAGTATTGGATCTTTCATCTAATGGTCTAACTGGAGACATCCCAATGCAACTCTTTTCAGTTCCAAGCTTCAACTTTTCTAATACTCAACTTCATTGTGGATCTCATCATTTGGAGCGGCCTTGCGTTTCTAATTCTGCGATCCCAGCTTCCACCAACAAATCAAAAGTTGCAGTTGTTGTGAGTTTTGCTAGTTGTGGTGCATTAGCACTTCTTTGTCTTGGGGCTATCTTTGCATATAGATACCGATACATACAAAGATGTGAAAAAGAAGTCTTCTTTGATGTTTCAGGTGAAGATGAGAGCAAAATTTCCTTGGGACAACTGAGAAGATTTTCCTTGAGAGAGCTACAACTTGCCACTAAGAATTTCAGTGAGAGCAATGTGATTGGCCAGGGAGGCTTTGGAAAAGTTTACAAAGGAGTACTTTCAGATGACACTAAAGTTGCTATAAAACGTCTAGCTGATTACAATAATCCTGGTGGAGAGGCTGCATTCCAAAGAGAAGTTCAACTAATTAGTGTTGCAGTTCACAGGAACCTCCTTCGCCTAATCGGATTCTGCACATCCTCTACTGAGAGAATCCTTGTATACCCTTTCATGGAAAATCTAAGCGTAGCGTATCGCTTGAGAGATTTAAAACCTGGTGAGAAAGGCTTGGACTGGCCAACAAGGAAGCGTGTGGCTTTTGGTACAGCACATGGCTTGGAGTACCTCCATGAGCAATGTATTCCCAAGATCATACACCGCGATCTAAAAGCCGCAAACATCTTACTAGACAATGACTTTGAAGCTGTACTCGGAGATTTCGGGTTGGCAAAGCTTGTTGACACAAGGCTGACCCATGTCACCACTCAGGTGCGAGGCACAATGGGCCATATCGCCCCAGAATACCTCTCCACTGGAAAATCAACGGAGAAGACTGATGTCTTTGGATATGGCATAACTCTCCTTGAACTTGTCACCGGTCAGCGCGCCATAGACTTGTCCCGGCTTGAAGAGGAGGAGGATGTTCTTTTGCTTGATCATATAAAGAAGCTACTAAGAGAGAACAGACTAGAGGACATAGTGGATAGGAATCTGGATAGTTATGATCCAAAAGAAGTGGAAACAATAGTTCAAGTAGCAATGCTTTGCACACAAGGCATGCCAGAGGACAGGCCAAGCATGTCAGATGTAGTGAATATGCTTCAAGGTGTGGGTTTAGCAGAGAGATGGGCAGAGTGGGAGCAATTAGAAGACTTCAGTAATCAAGAATTCTCATTACTTTCTCATCACTTTGCTTGGGCTGATGAATCCACTCTTCAAGAGGCTATACAACTTTCCACAGCAAGATAA 1992 0.4277 MVDSSVQASASSYWITCFSVFPFLQGSRKSSSEIFLDIKEPNNNMLGPKLIGDTLKLMTRLLLFLSVLRLSSATKDPDVEGEALFQVRQALHDPLHQLTDWNYFFVSACVSWSHVTCRNGHVIALSLATYELSGTISPSITRLKYLSSLELQNNKFSGPLPDYIANLTQLQYLNLGDNHFSGSIPASWGKLQNLKNLILRGNDLSGPVSDMLANISGLAVLDLSSNGLTGDIPMQLFSVPSFNFSNTQLHCGSHHLERPCVSNSAIPASTNKSKVAVVVSFASCGALALLCLGAIFAYRYRYIQRCEKEVFFDVSGEDESKISLGQLRRFSLRELQLATKNFSESNVIGQGGFGKVYKGVLSDDTKVAIKRLADYNNPGGEAAFQREVQLISVAVHRNLLRLIGFCTSSTERILVYPFMENLSVAYRLRDLKPGEKGLDWPTRKRVAFGTAHGLEYLHEQCIPKIIHRDLKAANILLDNDFEAVLGDFGLAKLVDTRLTHVTTQVRGTMGHIAPEYLSTGKSTEKTDVFGYGITLLELVTGQRAIDLSRLEEEEDVLLLDHIKKLLRENRLEDIVDRNLDSYDPKEVETIVQVAMLCTQGMPEDRPSMSDVVNMLQGVGLAERWAEWEQLEDFSNQEFSLLSHHFAWADESTLQEAIQLSTAR 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2292 663 SMART serkin_6 342 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco04g2292 663 Pfam Leucine rich repeat 146 204 IPR001611 GO:0005515
Acco04g2292 663 FunFam Somatic embryogenesis receptor-like kinase 1 419 635 - -
Acco04g2292 663 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 61 626 - -
Acco04g2292 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
Acco04g2292 663 Gene3D Phosphorylase Kinase; domain 1 311 418 - -
Acco04g2292 663 Gene3D Transferase(Phosphotransferase) domain 1 419 634 - -
Acco04g2292 663 SUPERFAMILY Protein kinase-like (PK-like) 320 615 IPR011009 -
Acco04g2292 663 Pfam Protein kinase domain 343 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco04g2292 663 SUPERFAMILY L domain-like 81 266 - -
Acco04g2292 663 FunFam Somatic embryogenesis receptor kinase 1 311 418 - -
Acco04g2292 663 ProSitePatterns Protein kinases ATP-binding region signature. 348 370 IPR017441 GO:0005524
Acco04g2292 663 ProSiteProfiles Protein kinase domain profile. 342 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco04g2292 663 Gene3D Ribonuclease Inhibitor 77 261 IPR032675 -
Acco04g2292 663 FunFam Leucine-rich repeat receptor-like protein kinase 77 234 - -
Acco04g2292 663 Pfam Leucine rich repeat N-terminal domain 79 117 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2292 Acco-ChrAcco04 39154257 39158680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2292 58 663 Receptor kinase-like Gene Family AT5G10290 55.501 0.0 649
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Acco04g2292 Pkinase 4.7e-44 CL0016