Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2218 ATGGCTGGCAAAAGTGGCAAGAATCCAGTAAGCCTCAACGATAGCCATTATCGGCTCCTCCAAGACCTTTCCGCTCCTCCGAAACCCTACTCAAAGCTATCTGATGATGAGGACGAGTCGTCCCCGACAATACTCAAAGGCTCAAGGCAGCAGCAGGGAAAAGCTTTATTTAGGGACGAGGAAGATGATAGCATCCCTCGATTTTCTGCGATTACCGATTTTGATTCTCCTATTGAGCTATGCTCAGCGGAAGACAAACAGCCCGTCAAGGTAGATGATGGTCGACATCGTCTCTGTACACTCTCGACGAAGGAAAATATTAAATATCAAGGTGACAATATTCCCCAGTCTAAAGAAGCAACCGACTCTGATACCCGCAAAGTGGAAAAGAAGACTAAGGTCAAAATGGAAGGCCGGCGTCGCCTATGCAAGGCTTCATACGCAGACAATGATAATACTGATAAAATGGTGGCGCTAAATGACTCGGAGGTTTCTGATCTTGTGGATTTTGATTCACCCTCTTTGCCGACGAAAAATGCTACTGGGATTGAGAAGAGTCAGGGCAGGAGTGAAATTAGGGACATATTAGATGAGTTGAGCTCGAAGTTTGATGTTATGTCAATTGAGAAGAAGCGGGTAGTGAAATCAGCACATACATTTGAAAATTGTTCAGCATTTGTTGTAGGAAATGAAACTACGGAAGATAAGAATATTGATTATGCCAGTGCAGATTCTTCATTTTCAGCTCAGCAGGACCCATGCGACAGTTCATCTGATGCATCTAAGGGTGGTACTGGAGGCATTGAACATGTGGAAGATGATTCGGATGATTCTGTTGAAGTGCTCGATCATTTGGACTCTGAGAATGATAATTCTATAACTTTGAATGGCCCACATTCCACATACAAGTTGCCAGGAAAAATTGCAAAAATGTTGTATCCACATCAGCGTGATGGTTTGAAGTGGCTCTGGTGTCTTCATTGTCAGGGTAAGGGTGGAATCCTGGGGGATGACATGGGTCTAGGGAAAACTATGCAGATTTGTAGTTTTTTAGCTGGTTTATTCAACTCACGTTTGATTAAAAGGGCATTGGTGGTGGCACCAAAAACCCTACTTCCACACTGGATCAAGGAACTTTCTGTTGTTGGTCTTTCTGAGAAGACAAGGGAATACTTTGGAACTTGTACTAAACTCCGAGATTATGAACTTCAATACATACTCCAGGATAAAGGTGTTCTTCTCACAACATATGATATTGTTCGCAATAATTCTAAATCATTACGGGGGAATTATGTATCTGATGATGAGGAAAGTGAAGACGGTCCCATATGGGATTATATGATCCTCGATGAGGGCCATCTTATAAAGAATCCAAGCACACAAAGAGCTAAAAGTTTGCTAGAGATACCAAGTGCCCATCGGATAATCATCAGTGGCACACCATTGCAAAATAATCTGAAGGAGTTGTGGGCCTTGTTCAATTTCTGCTGCCCTGAGTTGCTGGGTGATAAGAAATGGTTTAAAGAAAATTATGAGTCAGCTATACTTCGTGGAAATGACAAAAAGGCTTCTGAGAGAGAGAAGCGTGTTGGTTCTTCTGTTGCGAAGATGCTTAGAGATCGTATTCAGCCTTACTTTTTAAGACGCCTAAAGAGTGAGGTTTTTAGTCAAGATGACAAGAATTCAACAATGAAACTCTCTCATAAACGGGAGATCATTGTGTGGCTACGATTGACTAGTATTCAGAGATATCTTTATGAAGCGTTTCTAAAGAGTGAGATTGTTCTTTCAGCATTTGATGGCTCACCGCTTGCTGCACTTACGATTTTGAAGAAAATTTGTGATCATCCGCTTTTGTTGACTAAGCGGGCAGCTGAAGATGTGTTGGAAGGGTTGGACTCAATGTTAAAGCCAGAAGAGGTTAACGTTGCAGAGAAATTGGCAATGCACATAGCTGACGTTGCTGACGCGGACAAGTTCAAGGCTGAGCATGAAGTATCGTGCAAAATGTCTTTCATAATGTCATTATTGGATAATTTGATCCCACAAGGACATCATGTGCTTATTTTTTCTCAAACTCGCAAGATGCTTAATCTTATTCAGGAATCTATAACGTCCAAAGGTTATGAATTTGTACGAATTGATGGAACAACAAAAGCTAGTGATAGAATAAAGATTGTTAATGATTTCCAAGATGGTTCTGCAGCTCCCATATTCCTTTTGACATCTCAAGTTGGCGGTTTGGGGCTGACACTTACTAAGGCAGATCGTGTAATTGTAGTTGATCCTGCTTGGAACCCAAGTACCGATAACCAAAGTGTTGACCGTGCATATCGTATTGGCCAAAATAAAGATGTTCTTGTATATAGACTAATGACAAGCGGAACTGTTGAAGAAAAGATATACAGGAAGCAGGTATACAAGGGGGGATTGTTTAAAACAGCAACCGAGCATAAAGAACAAATTCGGTACTTCAGCCAGCAGGATCTCAGAGAGCTTTTCAGCCTCCCTAAGGAGGGTTTTGATGTATCTGTTACTCAGAAGCAATTAGAGGAGGAGCATGCTTGCGAAGATACAGTGGATGACTCTTTTAAAGCACACATAGAGTTCTTGAAAAGTCAAGGTATAGCTGGAGTTAGTCACCACAGTTTACTCTTCTCCAAAACAGCACCAGTTCAAGATGCACCTGAGGATGAAGTGTCAAGGAATCATGGGACCAGATATTTGGGAACTTCAGCATCTACTTCCCTTGAACGTCCTGTTGATGGAGCTGAGTTTGCTTTTAATCCAAAGGAAGTCAAAGTGAGCAAAAAAGGTTCTTCCCCAAATAGTGCTGGTAAATGGACTGAGTCTGAAATCAAGGAAAAAATCAAACGGATTTCTCAAACACTCGCAAATAAGGCGATGATTTCTAGATTACCTGATGGGGGAGAAAAACTACAGCAGCGGCTTGCTCAACTAAATTCCGAACTCAGCAAATTGAAGGTGGAAGAAAGAAATGTGATTGATTTGGATGAAATAAGTGGCAAATTTCAAAAGGTATTAAATGTGTAA 3054 0.4142 MAGKSGKNPVSLNDSHYRLLQDLSAPPKPYSKLSDDEDESSPTILKGSRQQQGKALFRDEEDDSIPRFSAITDFDSPIELCSAEDKQPVKVDDGRHRLCTLSTKENIKYQGDNIPQSKEATDSDTRKVEKKTKVKMEGRRRLCKASYADNDNTDKMVALNDSEVSDLVDFDSPSLPTKNATGIEKSQGRSEIRDILDELSSKFDVMSIEKKRVVKSAHTFENCSAFVVGNETTEDKNIDYASADSSFSAQQDPCDSSSDASKGGTGGIEHVEDDSDDSVEVLDHLDSENDNSITLNGPHSTYKLPGKIAKMLYPHQRDGLKWLWCLHCQGKGGILGDDMGLGKTMQICSFLAGLFNSRLIKRALVVAPKTLLPHWIKELSVVGLSEKTREYFGTCTKLRDYELQYILQDKGVLLTTYDIVRNNSKSLRGNYVSDDEESEDGPIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDKKWFKENYESAILRGNDKKASEREKRVGSSVAKMLRDRIQPYFLRRLKSEVFSQDDKNSTMKLSHKREIIVWLRLTSIQRYLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGLDSMLKPEEVNVAEKLAMHIADVADADKFKAEHEVSCKMSFIMSLLDNLIPQGHHVLIFSQTRKMLNLIQESITSKGYEFVRIDGTTKASDRIKIVNDFQDGSAAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQNKDVLVYRLMTSGTVEEKIYRKQVYKGGLFKTATEHKEQIRYFSQQDLRELFSLPKEGFDVSVTQKQLEEEHACEDTVDDSFKAHIEFLKSQGIAGVSHHSLLFSKTAPVQDAPEDEVSRNHGTRYLGTSASTSLERPVDGAEFAFNPKEVKVSKKGSSPNSAGKWTESEIKEKIKRISQTLANKAMISRLPDGGEKLQQRLAQLNSELSKLKVEERNVIDLDEISGKFQKVLNV 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2218 1017 FunFam Protein CHROMATIN REMODELING 24 291 569 - -
Acco04g2218 1017 CDD SF2_C_SNF 661 792 - -
Acco04g2218 1017 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 565 841 IPR027417 -
Acco04g2218 1017 Gene3D - 288 570 IPR038718 -
Acco04g2218 1017 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 672 831 IPR001650 -
Acco04g2218 1017 Gene3D - 571 918 IPR027417 -
Acco04g2218 1017 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 324 499 IPR014001 -
Acco04g2218 1017 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 301 549 IPR027417 -
Acco04g2218 1017 Pfam Helicase conserved C-terminal domain 670 781 IPR001650 -
Acco04g2218 1017 Pfam SNF2-related domain 327 619 IPR000330 GO:0005524|GO:0140658
Acco04g2218 1017 PANTHER SNF2/RAD54 FAMILY MEMBER 128 994 - -
Acco04g2218 1017 MobiDBLite consensus disorder prediction 119 134 - -
Acco04g2218 1017 MobiDBLite consensus disorder prediction 109 134 - -
Acco04g2218 1017 MobiDBLite consensus disorder prediction 244 263 - -
Acco04g2218 1017 SMART helicmild6 698 781 IPR001650 -
Acco04g2218 1017 MobiDBLite consensus disorder prediction 895 914 - -
Acco04g2218 1017 MobiDBLite consensus disorder prediction 244 273 - -
Acco04g2218 1017 MobiDBLite consensus disorder prediction 1 62 - -
Acco04g2218 1017 SMART ultradead3 307 507 IPR014001 -
Acco04g2218 1017 Coils Coil 977 997 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2218 Acco-ChrAcco04 38256711 38265732 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2218 312 835 RAD5 or RAD16-like Gene Family AT1G02670 25.310 1.99e-38 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Acco04g2218 SNF2_N 3.7e-46 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g2218 04 38256711 38265732 Acco04g2218 04 38256711 38265732 ECH