Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2217 ATGGCGGATAAAGATGGCACCAAACCATTGAGCTCCAACCCCAGCCCTTATCGAATCCTCCAAAACCTTTTTGCTCCTAGTAAGCTCTCAACAAACTCGTATGATGATGAACATGATAAGTTACCAAGTTGGCGAGAAGATGTTGAAGCTTCATCAAACGACAGCAGAAGTGAAGAACATGGTGATTGTGGTGGTGGCATTGAAGAATCCGTGGAAAATGACTCAGAATATTCTGTTCAATTGGATCATTTTGCTTCTAAGAGTGATAATTCTGTAACATTGGATGGCCCAAATCGTACATTCAAGTTGCAAGGTGAAATTGCAGCGATGTTGCTAGAACATCAGCGCGATGGCTTGAAGTGGCTCTGGTCTTTGAATTGTCAGGGAAAAGGCGGAATATTGGGAGATGACATGGGTTTGGGAAAAACAAGGCAGGAAGGTGTTATTGTCACAACATATGGCATGGTTCGTGACTATTCCAAGTCATTAAGTGAGCTCAGACACTTACGATCTTATGATGAGAAACGCCGAGACAGCCCCAAATGGCCGGATTATGTGATACTCGATGAGGGCCATCAAATAAAGAATCCAAATACACAGAAAGCTCGAACTTTGCAAGAGATACCATGTCCCCATCGCTTAGCCCTAAGTGGCACACCATGGCAAAATAATCTTAAGGAGATGTGGGCCTTGTTCAATTTCTGCAATCCTGGGTTGCTCGGTGATTATGAATGGGCTGATATGGACAAAATGAAAAGGCCGCCTTTGTTTTACAATTCTAATGATTTAATTGGCCAAAATACTGCCATTCGAAGTTTTGGCTTAAAGGAATCCCTATTGTCCAGAGGTTATAAATTCTTACGAATTGATGGAACAACAAAAGCCGAGGACAGAACAAAGATCGTTGATGATTTCCAACAACATGCTGTAGCTCCCATTTTTCTTTTGTCATCTAAAGTTGGCGGTTTAGGGCTGACACTAACTAGAGCAGATCGTGTGATCGTGTCAGACCCTGATTGGAACCCAAGTACGGATGACCAGATTGTTGATCGTGCATGTCGTATTGGTCAAGCGAAAGATGTTGTTGCATATAGACTAGTTACATGTGGAACACTCGAAGAAAAAGCATACAGGAAGCAAGTATTCAAGGACGGATTGGGTAAGACTGGGACTGAGCATAAAGAAAAAGCTCGTCACTTTAGCTGGAATGATCACAGATATCCTTTCACTCCCCCCCAAAAAGGCTTTGATGTATCTGTCACCCAGCAGCAATTAGAGAAGAAGTGTGATTGGGAAGCGACAATGGATGAGTCTTTTAAAGAACATATAGATTTCTTGAGAAGTCTAGGCATAGCTGGAGTTAGTCACCACAATGTAATTCTCTCCATAGAAGGATCAGATGATGATGACGACCCTGAAAATTATGAAGCAACAAGGTAA 1440 0.4229 MADKDGTKPLSSNPSPYRILQNLFAPSKLSTNSYDDEHDKLPSWREDVEASSNDSRSEEHGDCGGGIEESVENDSEYSVQLDHFASKSDNSVTLDGPNRTFKLQGEIAAMLLEHQRDGLKWLWSLNCQGKGGILGDDMGLGKTRQEGVIVTTYGMVRDYSKSLSELRHLRSYDEKRRDSPKWPDYVILDEGHQIKNPNTQKARTLQEIPCPHRLALSGTPWQNNLKEMWALFNFCNPGLLGDYEWADMDKMKRPPLFYNSNDLIGQNTAIRSFGLKESLLSRGYKFLRIDGTTKAEDRTKIVDDFQQHAVAPIFLLSSKVGGLGLTLTRADRVIVSDPDWNPSTDDQIVDRACRIGQAKDVVAYRLVTCGTLEEKAYRKQVFKDGLGKTGTEHKEKARHFSWNDHRYPFTPPQKGFDVSVTQQQLEKKCDWEATMDESFKEHIDFLRSLGIAGVSHHNVILSIEGSDDDDDPENYEATR 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2217 479 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 148 238 IPR014001 -
Acco04g2217 479 Pfam SNF2-related domain 145 244 IPR000330 GO:0005524|GO:0140658
Acco04g2217 479 Gene3D - 81 148 IPR038718 -
Acco04g2217 479 Gene3D - 149 255 IPR038718 -
Acco04g2217 479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 392 IPR027417 -
Acco04g2217 479 MobiDBLite consensus disorder prediction 8 31 - -
Acco04g2217 479 PANTHER SNF2/RAD54 FAMILY MEMBER 39 145 - -
Acco04g2217 479 MobiDBLite consensus disorder prediction 32 67 - -
Acco04g2217 479 Pfam Helicase conserved C-terminal domain 277 356 IPR001650 -
Acco04g2217 479 Gene3D - 273 443 IPR027417 -
Acco04g2217 479 MobiDBLite consensus disorder prediction 1 75 - -
Acco04g2217 479 CDD SF2_C_SNF 275 367 - -
Acco04g2217 479 SMART helicmild6 273 356 IPR001650 -
Acco04g2217 479 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 238 401 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2217 Acco-ChrAcco04 38226909 38234670 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2217 280 383 RAD5 or RAD16-like Gene Family AT5G22750 40.000 2.21e-17 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Acco04g2217 Helicase_C 7.3e-14 CL0023