Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2206 ATGAACGAAGAGAGTCCCTGCAACAGCACAAATTTGCCAAGCAACAACAAAGCCAGTCCTGAAAGCCCTTGCTTGAAATCATCATCATCAGCAGTAACAACAATAACAACAAACAAAGAACAAGATCGATTCCTTCCGATCGCGAATGTTGGAAGGATCATGAAGAAAGTGATCCCTTCAAATGGGAAAATCTCAAAGGACGCCAAAGAGACTGTCCAAGAATGTGTTTCTGAGTTCATCAGCTTCATCACCAGCGAGGCCTCCGATAAGTGCCAGGGAGAAAAGAGGAAGACCATTAATGGCGATGACATTATCTGGGCCATCTCAACTCTTGGCTTTGAGAACTACGTGGATCCTTTGAAATCCTACCTTCAGAAATATAGAGAGATAGAAGGAGAAAAGCTTAATGTTCCCAAACAACAACGTTCTCATCATGATCATCATCAAAGCAGGCTACAACACAATAATATTACTAATATTAATAATATACCTTTAAATACTTGTGTATATTCTTCAACCAATCTCATTTCTCATCCTCATCCTCCTTATGTGACCTCGGATCAGACATTCTCCATACCTTTCTCATCAACTTCTATTCAGAAACCGTTACAGCCCCAGGACAATATGGATACGGTGGGGCGTTGGTAA 648 0.4105 MNEESPCNSTNLPSNNKASPESPCLKSSSSAVTTITTNKEQDRFLPIANVGRIMKKVIPSNGKISKDAKETVQECVSEFISFITSEASDKCQGEKRKTINGDDIIWAISTLGFENYVDPLKSYLQKYREIEGEKLNVPKQQRSHHDHHQSRLQHNNITNINNIPLNTCVYSSTNLISHPHPPYVTSDQTFSIPFSSTSIQKPLQPQDNMDTVGRW 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2206 215 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 44 108 IPR003958 -
Acco04g2206 215 SUPERFAMILY Histone-fold 41 144 IPR009072 GO:0046982
Acco04g2206 215 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 26 153 IPR027113 GO:0001228|GO:0006355|GO:0016602
Acco04g2206 215 MobiDBLite consensus disorder prediction 1 28 - -
Acco04g2206 215 FunFam Nuclear transcription factor Y subunit B-3 33 157 - -
Acco04g2206 215 ProSitePatterns NF-YB/HAP3 subunit signature. 75 91 IPR003956 GO:0005634|GO:0006355|GO:0043565
Acco04g2206 215 PRINTS CCAAT-binding transcription factor subunit A signature 72 90 - -
Acco04g2206 215 PRINTS CCAAT-binding transcription factor subunit A signature 91 109 - -
Acco04g2206 215 PRINTS CCAAT-binding transcription factor subunit A signature 110 128 - -
Acco04g2206 215 Gene3D Histone, subunit A 32 161 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2206 Acco-ChrAcco04 38051101 38051748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2206 1 212 CCAAT-HAP3 Transcription Factor Family AT2G13570 56.889 1.82e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Acco04g2206 CBFD_NFYB_HMF 3.5e-27 CL0012