Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2142 ATGAATACGAACCAGAATAATAATCATCCCTCTTTCACTACCAGTGTTATTAACAAGAATCTTGAGAATATGGCTTCTTCTTGGCCCACTGCCCATTCGACATCTTCTTCATCTTCTGGTTTTCTCATTAGTGACATGTTTGGCTTGAACTTGGAGCGAGAAGAAGAAGATCAAGAAGAGGAGGAGGAGGAAGAAAAGCTTGGAGCCATGAAGGAGATGATGTACAAGATCGCTGCTCTGCAACCCGTCGACATCGACCCTTCCACCATCCGGAAACCTAAGCGGCGGAACGTAAGGATCAGTGACGACCCTCAGAGCGTCGCCGCCCGCCACCGCCGTGAGAGGGTCAGCGAGAAAATCCGCATCCTCCAGAGACTCGTCCCCGGCGGAACCAAGCTCGACACTGCATCCATGCTCGACGAAGCCATTAGGTACGTCAAGTTCTTGAAGAGGCAAATCAGGTTGCTCCAATCTCCACCACCACCACAACAACACTGCAATAATATCGGTAGTACGATCACCACCACCGCCACTCTCTCTAATTGGCCTTATAAACCAGCCTCCACCTCCACCTTGGCCGCCGCAAGACTAGGCTTTAACGGTGGTGATGATAGCTCCTCGCGGTTTTACCGTAAGGCGTGTGTGGCTGATCTACTCAGAAGACAAGATGACAGAGTTGTTGAGGAGACTGAATTAACTTAG 702 0.5014 MNTNQNNNHPSFTTSVINKNLENMASSWPTAHSTSSSSSGFLISDMFGLNLEREEEDQEEEEEEEKLGAMKEMMYKIAALQPVDIDPSTIRKPKRRNVRISDDPQSVAARHRRERVSEKIRILQRLVPGGTKLDTASMLDEAIRYVKFLKRQIRLLQSPPPPQQHCNNIGSTITTTATLSNWPYKPASTSTLAAARLGFNGGDDSSSRFYRKACVADLLRRQDDRVVEETELT 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2142 233 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 105 160 IPR036638 GO:0046983
Acco04g2142 233 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 100 149 IPR011598 GO:0046983
Acco04g2142 233 Pfam Helix-loop-helix DNA-binding domain 110 149 IPR011598 GO:0046983
Acco04g2142 233 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 11 183 IPR045843 GO:0003700|GO:0006355
Acco04g2142 233 SMART finulus 106 155 IPR011598 GO:0046983
Acco04g2142 233 Coils Coil 53 73 - -
Acco04g2142 233 CDD bHLH_AtIND_like 101 158 - -
Acco04g2142 233 Gene3D - 103 164 IPR036638 GO:0046983
Acco04g2142 233 FunFam BHLH transcription factor 103 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2142 Acco-ChrAcco04 37278260 37279670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2142 67 163 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G09750 85.294 2.89e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco04g2142 HLH 1.5e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g2142 04 37278260 37279670 Acco04g2142 04 37278260 37279670 ECH