Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2141 ATGGCTGGCCCTGACAGCCACAAGGCTGTTGCTGATTTGCTGTGGACGGACCAGAAGGAAGCAGTGGTGGTGTCATCTCTTGTAGGACAGACCTCTTCCGTTATAACTGTTGGACCTTGCTACAACGAATTCTGCAAAATGTTTGGTGTGCGTGGTTCTGCCGGAATTGTTTCTGATGTTGTTTACCAGCTTCGTCAAACTTTATCACTTCGTGGTGTACGAGCACAATATATAAATATTGGAGGTGGTGTTGGAGGAGAAATCCCTGACAACAAGCGCCTTCAATATGCCCTGCAGCACATACATGGAATTGGCCGTTCCAAAGCTCACCATATTGTCTGTGAGCTTGGGGTTGAGAACAAATATGTCAAGGACCTAAGTAAGAGAGAGTTATATTCCCTTCGAGAATTACTCTCCAAGTACATGCTCGGAAATGACTTGAAAAGGTGTGTTGAGAAAGATATAGAAAGGTTGGTGAGTATTCAGTGCTACAGGGGTTTCAGACATGTGGATGGGTTACCTTGCAGAGGACAACGCACACATACAAATGCTCGCACCAGGAAGAGCAGGCCAGGTTTTGGTGCATCAAGATCTGCTCAAGAATAG 606 0.4587 MAGPDSHKAVADLLWTDQKEAVVVSSLVGQTSSVITVGPCYNEFCKMFGVRGSAGIVSDVVYQLRQTLSLRGVRAQYINIGGGVGGEIPDNKRLQYALQHIHGIGRSKAHHIVCELGVENKYVKDLSKRELYSLRELLSKYMLGNDLKRCVEKDIERLVSIQCYRGFRHVDGLPCRGQRTHTNARTRKSRPGFGASRSAQE 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2141 201 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 68 188 - -
Acco04g2141 201 MobiDBLite consensus disorder prediction 176 201 - -
Acco04g2141 201 ProSitePatterns Ribosomal protein S13 signature. 165 178 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Acco04g2141 201 Gene3D 30s ribosomal protein s13, domain 2 149 188 IPR027437 -
Acco04g2141 201 Pfam Ribosomal protein S13/S18 85 186 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Acco04g2141 201 MobiDBLite consensus disorder prediction 187 201 - -
Acco04g2141 201 FunFam 30S ribosomal protein S13 84 149 - -
Acco04g2141 201 Gene3D - 84 148 - -
Acco04g2141 201 Hamap 30S ribosomal protein S13 [rpsM]. 77 199 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Acco04g2141 201 ProSiteProfiles Ribosomal protein S13 family profile. 84 189 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Acco04g2141 201 FunFam Ribosomal protein S13 149 188 - -
Acco04g2141 201 SUPERFAMILY S13-like H2TH domain 85 189 IPR010979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2141 Acco-ChrAcco04 37263338 37265626 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2141 92 189 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 30.328 1.40e-06 44.7