Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2133 ATGGCTCCGGCCAACTCCTCGGCGGCGTCTCAGAGGCTCATCGGCTTCATCCGCCGTACACAAGCTCCACGCCAGTCGTCGCCGCCGGCCTCCCATCCGGTCAAGAAGTATAAGTCATTGACCGAGATAATGACCAAGGCACGATATGCTGTTGTGGAGAGGGATGATTACAGCGATGTGTTGTGTGACCAATGTGGCTCGGGTGAACGCCCGGACGAGCTGCTTCTGTGTGATAAATGCGATAAGGGCTTCCATATGAAATGCGTGAGGCCTATTGTTGTTAGAGTTCCTATTGGATCATGGCTTTGCCCTAAGTGTTCGGGGGAGAAGAGAGAAAGAAGTTTCTCTCAGAAGAAGATAATTGATTTTTTCCAGATTCAGAAATGTGCTGATCTTAAAAACAAATGCTCTTTTCCCCAAGATGCCAAGAAGCGTAAAAGGCGCACGCCACTGATATTTCACAAGAAACGAAGAAGATTATTGCCGTTTATTCCTGCAGAAAATCCTTCCCTGAGACTGAAACAGATGGGTTCTCTTGCTTCTGCTTTAACAGCATTGCATATGGAATTCAGTGATGATCTCACATACTCACCTGAAATGGCTCCTAGGTCTGCTAATCTTGCCGATTTTGAAAATGGTGGCATGCAGGTTCTTTCCAGGGAAGATATTGAGACCTTGGAACACTGCAGAGCCATGAGTAGAAGAGGGGAATGCTCTCCCCTTATGGTTGTTTATGATTCATGTGAAGGGTATACAGTTGAGGCCGATGGCCCGATCAAGGATATGACATTCATTGCTGAGTACACAGGCGATGTGGATTACATTAAGAACCGAGAAAATGATGATTGTGACAGTCTGATGACCCTTCTGCTAGCAACTGATCCTACTAAAAGTCTTGTAATCTGCCCTGATAAACGTGGAAACATTGCTCGTTTTATAAATGGCATCAACAATCATACACAGGAAGGTAGAAAGAAGCAGAACTGTAAATGTGTGAGATACAATGTTAATGGTGAGTGCAGGGTCTTTTTGGTTGCTACTCGTGATATTTCAAAAGGGGAGAGGCTTTATTATGATTATAACGGTTATGAGCATGAATACCCTACTCATCATTTTAATTTCAATGCCTACGTTTCTGAGAGAAAGTGGAAACTACTTTATATGCAATGTCAGCAAATCCAACTATCAATCTCTCGCTTCCACAAATGCTTTATGGCCATAGTACACCATTAA 1233 0.4396 MAPANSSAASQRLIGFIRRTQAPRQSSPPASHPVKKYKSLTEIMTKARYAVVERDDYSDVLCDQCGSGERPDELLLCDKCDKGFHMKCVRPIVVRVPIGSWLCPKCSGEKRERSFSQKKIIDFFQIQKCADLKNKCSFPQDAKKRKRRTPLIFHKKRRRLLPFIPAENPSLRLKQMGSLASALTALHMEFSDDLTYSPEMAPRSANLADFENGGMQVLSREDIETLEHCRAMSRRGECSPLMVVYDSCEGYTVEADGPIKDMTFIAEYTGDVDYIKNRENDDCDSLMTLLLATDPTKSLVICPDKRGNIARFINGINNHTQEGRKKQNCKCVRYNVNGECRVFLVATRDISKGERLYYDYNGYEHEYPTHHFNFNAYVSERKWKLLYMQCQQIQLSISRFHKCFMAIVHH 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2133 410 ProSiteProfiles Zinc finger PHD-type profile. 59 109 IPR019787 -
Acco04g2133 410 SMART PHD_3 61 107 IPR001965 -
Acco04g2133 410 CDD SET_ATXR5_6-like 236 372 - -
Acco04g2133 410 SUPERFAMILY FYVE/PHD zinc finger 27 107 IPR011011 -
Acco04g2133 410 Pfam PHD-finger 62 107 IPR019787 -
Acco04g2133 410 ProSitePatterns Zinc finger PHD-type signature. 62 106 IPR019786 -
Acco04g2133 410 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 133 371 - -
Acco04g2133 410 SUPERFAMILY SET domain 233 361 IPR046341 -
Acco04g2133 410 ProSiteProfiles SET domain profile. 240 361 IPR001214 GO:0005515
Acco04g2133 410 FunFam Histone-lysine N-methyltransferase ATXR5 145 373 - -
Acco04g2133 410 Pfam SET domain 279 361 IPR001214 GO:0005515
Acco04g2133 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 122 IPR013083 -
Acco04g2133 410 Gene3D SET domain 145 373 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2133 Acco-ChrAcco04 37166576 37171737 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2133 59 113 C2H2 Transcription Factor Family AT3G01460 37.500 5.38e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Acco04g2133 SET 4.3e-07 No_clan