Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2128 ATGAACCCGCCGGGGAATTCCACCAGCCGAGAAACACCACCGTCGTCTGAGAACCAAACTCAACGCCAATGGCCTGGGCAACAAACTCTTATAGCCAACAATGAATCCCATATTATGAACGAACCATTTTTGCCATTCCATGACGCCGGCGGAAGAAGAGCACCTGCATCGTCGTGGCCCCAGCGTCTTGGAATCGAGGAGCCCCGCCAAACACCTATTATAGCCAACCAAGAATCTTACATTATCAACCAACCATTTCAGCCACCGCATCGTGCCACCGATGGAAGAAGAACCCCACCGTCGTGGCCCCTGCGTCTTGGAATCGAAGTGCCTCTCCAAGAATCTCTCACTATCAACTATCCATTTCTCCCACCGCATCATCATGCTGCCGGCGGAATAAGAACACCACCACCGTCGACGTCGTCTTCCCAGAGTCAACTTGGAATCCAAGAGCCTGGCCAACCTCCTTCTAGATTCAACAACGGATCACTCCATATCAAGGAACCATCGCCGCCCCTATACTCCGCCGGTAAAAGAACAAAGTGGCCATTCTTTCATAATCAACATGCTCTCAGAGTCAACCAAGAATCCCACACTATCAAGAAACCTTCGTCGCGTGGCGGCGGCCGACGTCGTTCCGTCTCCAATCAAGCCCGCAAAGGTGCCTCCTCCTCCTCCAATGATCATCGGTGTGCCAATTGCGGCAGAACTTCCACGCCCCAATGGAGAAAAGGCCCCAGAGGTTCAAAGTCACTGTGCAATGCCTGTGGGCTCAGACACTGGAATGAAGAGAGAAGAGCCGCAGCGGCTACCGCATCGAAATTACAGTCATCGAACATAGTGTTGCCACCGGGAATGTCATCATCGGTGGCAAGATGTTTTGAGCAGGGAGCACCATATGGTTTCTCAAACATCCCAAACAGATTTCAGCCCACGGACGATTTGATCACAACTGTGAGGCAAAATATTTTATTGGGACACCAATCCAGCATTTTGTTGCCACAGGAAATGTCGTCATCATCGGCGGCACCAAGTTTAGCGCCGGAAGCACCATATGGTTTCTCACAGCTCCCAGACAGAGTTCAGCCCATGGAAAATAATGCGAACCCATTTGTGCCGGAAAATAGCTTCTGGGGAGACTCTTCGGGATTAATATTATTGCGGTCATCGAACATAGAGTTGCCACCGGAAATATCACTAGCGGCGGCACCATGTCTTGAGCAGGAAGCTGCATCATATGGCTTCTCACAGCTCCCAGACACTGTTCAGCTCATGAACAATATGAACCTATCTGTGAGGGAAAATAGCTTATTGGGAGACTTATCATCGGAATTACAAACATTGAGCACAGTTTCGCCACCGGAAATATCAACACCGGCAGCACCATATAATTTCTCACAGGTTTCAAGCAGAGTTCAGCTCATGGACAATGCGAGCCCATCTATGTCAGAAAATAGCTTATTGGGAGACTTATTGGAATTATTCCAGTCACCGTCGCCACCGAAAATATCACCACCGGCGGCACCAGACAACAGTCGTGGAGCATAG 1548 0.5006 MNPPGNSTSRETPPSSENQTQRQWPGQQTLIANNESHIMNEPFLPFHDAGGRRAPASSWPQRLGIEEPRQTPIIANQESYIINQPFQPPHRATDGRRTPPSWPLRLGIEVPLQESLTINYPFLPPHHHAAGGIRTPPPSTSSSQSQLGIQEPGQPPSRFNNGSLHIKEPSPPLYSAGKRTKWPFFHNQHALRVNQESHTIKKPSSRGGGRRRSVSNQARKGASSSSNDHRCANCGRTSTPQWRKGPRGSKSLCNACGLRHWNEERRAAAATASKLQSSNIVLPPGMSSSVARCFEQGAPYGFSNIPNRFQPTDDLITTVRQNILLGHQSSILLPQEMSSSSAAPSLAPEAPYGFSQLPDRVQPMENNANPFVPENSFWGDSSGLILLRSSNIELPPEISLAAAPCLEQEAASYGFSQLPDTVQLMNNMNLSVRENSLLGDLSSELQTLSTVSPPEISTPAAPYNFSQVSSRVQLMDNASPSMSENSLLGDLLELFQSPSPPKISPPAAPDNSRGA 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2128 515 PANTHER GATA TRANSCRIPTION FACTOR 18 153 278 IPR044272 GO:0003700|GO:0009908
Acco04g2128 515 MobiDBLite consensus disorder prediction 135 164 - -
Acco04g2128 515 CDD ZnF_GATA 230 260 IPR000679 GO:0006355|GO:0043565
Acco04g2128 515 SMART GATA_3 225 277 IPR000679 GO:0006355|GO:0043565
Acco04g2128 515 MobiDBLite consensus disorder prediction 1 64 - -
Acco04g2128 515 ProSiteProfiles GATA-type zinc finger domain profile. 225 260 IPR000679 GO:0006355|GO:0043565
Acco04g2128 515 ProSitePatterns GATA-type zinc finger domain. 231 256 IPR000679 GO:0006355|GO:0043565
Acco04g2128 515 MobiDBLite consensus disorder prediction 127 179 - -
Acco04g2128 515 MobiDBLite consensus disorder prediction 209 245 - -
Acco04g2128 515 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 225 264 - -
Acco04g2128 515 MobiDBLite consensus disorder prediction 1 36 - -
Acco04g2128 515 MobiDBLite consensus disorder prediction 193 249 - -
Acco04g2128 515 Pfam GATA zinc finger 231 260 IPR000679 GO:0006355|GO:0043565
Acco04g2128 515 MobiDBLite consensus disorder prediction 489 515 - -
Acco04g2128 515 Gene3D - 222 279 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2128 Acco-ChrAcco04 37128600 37130261 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2128 230 270 C2C2-Gata Transcription Factor Family AT4G36620 73.171 2.00e-13 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Acco04g2128 GATA 2.4e-13 CL0167