Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2120 ATGGTCAGGGACGATCTATACATCACGATTCCGAGCTTCTTCCGGTGTCCTATATCCCTCGATATCATGAAATCTCCGGTGAGTCTCTCCACTGGCGTTACCTACGACCGTTCCAGCATCCAACGCTGGCTCGACAACGGCAACAACACCTGCCCTGCAACCATGCAGGTATTGCAAACCAAAGAATTTGTTCCGAACCGTACTCTACAGAGGCTTATCCAGATCTGGTCCGACTCGGTTGCAAACCGAGTCGAATCGGCCGATTCTCCGGCCACCAGAACAGTCCCCTCCCCGGATCAGGTTGTCGACTCTATGAAATACTTGGACGGCCACGGCGAGAACTGCCTCGATTCCTTATCTAGAATTCTATATTTCGCCGAAGAATCTGAAGAGAATCGGGAGTTCCTCGCGAAGTTAGACGGATTCGTGCCTTCACTCGTAGATTTACTCGACAATGTCAATGGCACCGTGGAAATGCTCGAGGGAGTGGTTAATGCTTTGGATGCGGTTCTAGATAAAATCGAAGATCGTGAGCAGTTGAAGAAATTGATGTTGAAGAACCACGATAATTGCCTAGCTTCTCTGCTCCTTGTTCTGCAACAAGGCAGCGCCGGCTCGAAAATTGGATTGGCGAGGATCCTGAGGTTCATCGCGGTGGACGCCGAGGCCAAATATATGATCGCTGAAAAGGAAGGTCTAATGTCCGAATTGCTAAAATCAGTCGCTCCAGACAAGGACCCAGAGCTAATCGAAAACGGCTTATCGTGTTTGATTGCAATCTCTACGCCGAAACGGAATAAGTTGAAATTGGTCCATATCGGAGCTATCAAGGCATTTTCGCAATTACTTTCCGCCTCAAATTCGAGCACTTCCGTAACGGAAAAGGTGCTGAAACTTCTCGAAACGGTGTCGTCAACCAAAGAAGGCAGGTCGGAGATTTCCGAGGACCCGGCGTGTTTACTGGCTGTACTGCAGAAAGTTATGAAGATATCGATGATCGCGACGGAGCACGCGGTGATGATACTGTGGACTTTGTGTTATCTGTTTCGCGATCAGAAGGCGCAGGAAGTGGTGGCAATGGCCAACGGTTTCACCAAATTTCTGATTCTGATGCAAAGCAATTGTTCGCCGGCGGTTCGTCAAATGTCGGCCGATTTGCTCAAGATTTTTCGGGTCAACTCGAAATCATGTCTTTCTTGTTATGATACTAAGACCACTCATATCATGCCCTTCTGA 1236 0.4862 MVRDDLYITIPSFFRCPISLDIMKSPVSLSTGVTYDRSSIQRWLDNGNNTCPATMQVLQTKEFVPNRTLQRLIQIWSDSVANRVESADSPATRTVPSPDQVVDSMKYLDGHGENCLDSLSRILYFAEESEENREFLAKLDGFVPSLVDLLDNVNGTVEMLEGVVNALDAVLDKIEDREQLKKLMLKNHDNCLASLLLVLQQGSAGSKIGLARILRFIAVDAEAKYMIAEKEGLMSELLKSVAPDKDPELIENGLSCLIAISTPKRNKLKLVHIGAIKAFSQLLSASNSSTSVTEKVLKLLETVSSTKEGRSEISEDPACLLAVLQKVMKISMIATEHAVMILWTLCYLFRDQKAQEVVAMANGFTKFLILMQSNCSPAVRQMSADLLKIFRVNSKSCLSCYDTKTTHIMPF 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2120 411 SUPERFAMILY RING/U-box 5 78 - -
Acco04g2120 411 PANTHER WDSAM1 PROTEIN 9 399 IPR045185 GO:0061630
Acco04g2120 411 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Acco04g2120 411 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Acco04g2120 411 Pfam U-box domain 10 77 IPR003613 GO:0004842|GO:0016567
Acco04g2120 411 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Acco04g2120 411 CDD RING-Ubox_PUB 11 63 IPR045210 -
Acco04g2120 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 95 IPR013083 -
Acco04g2120 411 SUPERFAMILY ARM repeat 109 390 IPR016024 -
Acco04g2120 411 Gene3D - 110 403 IPR011989 -
Acco04g2120 411 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 274 318 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2120 Acco-ChrAcco04 37050027 37051262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2120 1 411 U-box Gene Family AT5G64660 54.481 3.74e-149 427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g2120 04 37050027 37051262 Acco04g2120 04 37050027 37051262 ECH