Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2113 ATGGCTGGTTCCACTAATTCTCAGTTACTGAACTTCCATGATGACCTTCTTGGCCATCAATTTCATTACTCTAGAAGGTTACTATTCCTTAACTCCAACGCCAACTCACCCCAAAACTCCACAGAACCTTCCATCCTCGGAGATGGTTATACCTTAGATGCAAATGTCATAATGGTACTGTCTGTCCTCTTATGTGCTCTCTTCTGCTCATTGGGATTAAACTCCATCATCAGATGCGTCCTAAGGTGTTCCAACATCATCGTCGAAGGTAATAACAACGAGACATCAAACCCTTCGGCCGCAGCTCGACTGGCCAACAAGGGAGTGAAGAAGAAGGCCTTGAAGACTTTCCCTACAGTGACATACTCTTCTGAGTTGAACCTCCCAGGTTTAGACTCAGAGTGTGCGATTTGTCTTTCGGAGTTTAACAATGGCGATCGGCTTCGGATTCTTCCAAAGTGCAACCATGGCTTCCATGTTCGTTGTATTGACAAGTGGCTCAGTTCGCATTCTTCCTGCCCTAAGTGCAGACACTGCCTTATTCAGACATGTCAGAAGATTGTGGGGTCATCAACGAGGTCCTTGTCCCAACCTTCTTCTACTGTTGCTCCGGCTGAAACTATTGTGAGGATTGAACCTTTAGAACCGGAGGGTATGGTGCGTAACTATAGCTAG 675 0.4607 MAGSTNSQLLNFHDDLLGHQFHYSRRLLFLNSNANSPQNSTEPSILGDGYTLDANVIMVLSVLLCALFCSLGLNSIIRCVLRCSNIIVEGNNNETSNPSAAARLANKGVKKKALKTFPTVTYSSELNLPGLDSECAICLSEFNNGDRLRILPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIQTCQKIVGSSTRSLSQPSSTVAPAETIVRIEPLEPEGMVRNYS 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2113 224 CDD RING-H2_EL5-like 134 177 - -
Acco04g2113 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 181 IPR013083 -
Acco04g2113 224 PANTHER RING-H2 FINGER PROTEIN ATL78 20 219 IPR044602 GO:0016567|GO:0016740
Acco04g2113 224 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
Acco04g2113 224 Pfam Ring finger domain 134 177 IPR001841 -
Acco04g2113 224 FunFam RING-H2 finger protein ATL73 95 182 - -
Acco04g2113 224 SMART ring_2 135 176 IPR001841 -
Acco04g2113 224 SUPERFAMILY RING/U-box 113 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2113 Acco-ChrAcco04 36944350 36945024 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2113 26 181 C3H Transcription Factor Family AT1G20823 47.205 3.19e-43 142