Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2112 ATGGCTGCTTCTGCTAATTCTCAAGTACTGATCTTCCATGATCTTATTGGCCAATATTACTCCAGAAGGTTACTATTCCTTCACTCCCCTCACAACTCAACCAGCCCATCATCTTCTTCTAACAACACCTCTACAGAATCTTTGTTCCTCGGAGACGGTAACTTCGATGCAAATGTCATCATGGTACTGTCTGTCCTCTTATGTGCGCTCTTCTGCTCATTGGGATTAAACTCCATCATCAGATGTGCCCTAAGGTGTTCCAACATCATCATCCTCGACAATAATGAGGGCTCATCTTTAAACCCTTCTGCGGCGGCTCTGGTGGCCAACACCGGCGTGAAGAATAAGGCCTTAAAGACTTTCCCTACAGTGACATACTCTTCTGATTTGAACCTCCCAGGTTTAGACACAGAGTGCGCGATTTGTCTCTCCGAATTTAACAATGGCCATCGCCTTCGGATTCTTCCCAAATGTAACCATGGCTTCCATGTTCGTTGTATTGACAAGTGGCTCAGTTCGCATTCTTCTTGCCCTAAGTGCAGGCACTGCCTTATTCAGACATGTCAGAAGATTGTAGGGTCAAGATCATCAACGACAACCACGTCGTCTCAACCTTCTTCTGAAACTATTGTGAGGATCGTACCTTTAGAACCAGAAGGCATGGTACGTAATCACTATGCCTAG 684 0.4547 MAASANSQVLIFHDLIGQYYSRRLLFLHSPHNSTSPSSSSNNTSTESLFLGDGNFDANVIMVLSVLLCALFCSLGLNSIIRCALRCSNIIILDNNEGSSLNPSAAALVANTGVKNKALKTFPTVTYSSDLNLPGLDTECAICLSEFNNGHRLRILPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIQTCQKIVGSRSSTTTTSSQPSSETIVRIVPLEPEGMVRNHYA 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2112 227 CDD RING-H2_EL5-like 138 181 - -
Acco04g2112 227 SUPERFAMILY RING/U-box 117 186 - -
Acco04g2112 227 SMART ring_2 139 180 IPR001841 -
Acco04g2112 227 Pfam Ring finger domain 138 181 IPR001841 -
Acco04g2112 227 FunFam RING-H2 finger protein ATL73 101 186 - -
Acco04g2112 227 PANTHER RING-H2 FINGER PROTEIN ATL78 15 221 IPR044602 GO:0016567|GO:0016740
Acco04g2112 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 186 IPR013083 -
Acco04g2112 227 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2112 Acco-ChrAcco04 36932368 36933051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2112 50 185 C3H Transcription Factor Family AT3G10910 47.826 1.33e-40 135