Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2092 ATGGATTTGGACGATTTCCGATCAATATTGGAGACGGCCGGTGTGGATGTGTGGATGTTCATCGACACTGCAATCGACGTTGCTTCCATTGAGTACAACAACGAGTTAAAGCGTCGAAGGGATCGAATCGTTCAGCGTCTCTATGAAGCCACTTCAGCTCCTGGACAGTGTCGGAATTGCGAAGCGATTCGGCTTAAATCCAGTGGCCACCAAGTAAGCTCTCCAATTGAGAAACAGAGCACTCCTGAACTGAAAAGAGATGCCTCACCGGTAACGCCGCACTCTAACGGTCAAGATGACGACGATTTCGGTCTTTACGGAGGCCTTCTTGATGATGAGCAAAAGAAGATTCAAGAGATTAAAGAGCAACTTGAGGATCCTGACGGGCCTGAAGATTATGTGGTGGAGTTGCTACAGAATCTAGCGGACATGGATATTACATTCCAAGCGCTGAAGGAGACTGATATTGGCAGGCACGTTAATCGTTTGCGCAAGCATTCATCCAATGATGTTCGGAGATTGGTGAAGCTACTTGTCAGGAAATGGAAGGAGATTGTAGATGAATGGGTGAAGGTAAATCAACCTGGCGACTTTGCTTCTGTCATGGCTAATGGAGATTCGCCTATGCAGAAAAACACGCCAAACGGGCACAGTCAGATTCCTGATTTTGGATACTCGCCTAATCCGCACTATGGGAGTTCTAGTTCAGAGCGGAACTATTCAGAAGCTGAACCAAAGCCAATGACAGTTTCTCGAAGAGTACCACCAAAACCAGCAACCCTAGTGCCTATTCCTGCTTCTGCTCCTCAAAACAGAAAGAGAGAAGAGAGAGATAGTAATTTTGAAGCGGACAGACTTGCTTCAGCAAGAAGGCGGCTTCAAGAGAACTACAAAGAGGCTGAAAATGCCAAAAGACAAAGAACGATCCAGGTGATGGACCTCCATGAGATCCCTAGACCCAAGAAAAATGCCTTCTTTGCAAAGAACAAGTCTAGCGGCGGTTCTCAGGCGAGGCAATGGTAA 1023 0.4682 MDLDDFRSILETAGVDVWMFIDTAIDVASIEYNNELKRRRDRIVQRLYEATSAPGQCRNCEAIRLKSSGHQVSSPIEKQSTPELKRDASPVTPHSNGQDDDDFGLYGGLLDDEQKKIQEIKEQLEDPDGPEDYVVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKLLVRKWKEIVDEWVKVNQPGDFASVMANGDSPMQKNTPNGHSQIPDFGYSPNPHYGSSSSERNYSEAEPKPMTVSRRVPPKPATLVPIPASAPQNRKREERDSNFEADRLASARRRLQENYKEAENAKRQRTIQVMDLHEIPRPKKNAFFAKNKSSGGSQARQW 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2092 340 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 110 197 IPR035441 -
Acco04g2092 340 MobiDBLite consensus disorder prediction 270 284 - -
Acco04g2092 340 Pfam TFIIS helical bundle-like domain 137 186 IPR017923 -
Acco04g2092 340 MobiDBLite consensus disorder prediction 201 284 - -
Acco04g2092 340 ProSiteProfiles TFIIS N-terminal domain profile. 112 189 IPR017923 -
Acco04g2092 340 SMART TFS2_5 117 188 IPR003617 GO:0005634
Acco04g2092 340 Coils Coil 283 310 - -
Acco04g2092 340 CDD TFIIS_I 114 187 - -
Acco04g2092 340 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 115 194 IPR035441 -
Acco04g2092 340 MobiDBLite consensus disorder prediction 205 242 - -
Acco04g2092 340 MobiDBLite consensus disorder prediction 320 340 - -
Acco04g2092 340 MobiDBLite consensus disorder prediction 68 104 - -
Acco04g2092 340 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 340 IPR044790 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2092 Acco-ChrAcco04 36763837 36765863 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Acco04g2092 Med26 3.3e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g2092 04 36763837 36765863 Acco04g2092 04 36763837 36765863 ECH