Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2086 ATGGACTTTGACGAGTACGATTACCTGGAAAAGACAGTGGAGGAGCAGGGAGGTCAAGATTTGACGAAGAGCAAGGGAAAAAACGATAAGAGTGAGAGGGCTTACAGGAAGCGTGATGTCGACGATGACGTTGACGGTGAAGACAAGAAGAGCAAGAGGTCCAGGGGCGACGACGAGAATGGGTCGAGGAAAGATCGTGAGGACCGCGAGAAAGAACGTTCTAGTCGAGAAAAGGAACGGCATAGGAGTAGCAGAGACAGAGAGAAGGATGGTGATAGGGAGCGAGAGAGGAGGAGTAGTAGGGAGAGAGATAGGGAGAAAGAGAGAGATAAGGAGAGGGAAAGAGAGAAAAGGGATAAAGAGAGGGATAGGGAGAGAAGAGACAGAGACAAGGAGAGGGAAAGAGAACGGGAGAGAAGGGAGAGAGAGAAGGAGAAGGAAAGGGAGGAGAAAGAGAGGTCCAGGAGAAGCAAAAGTCGTTCTGATCGAGATAGAGAAAGAGAACGAGAATTGGAGTCTAGAGACAGCCGGAGATTTAGGGATAAGAAAGAGGCTGTGGAACCTGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCATACCAGATGCCTCTAAAAGCAACAGAGAGAGATGTTTATGAATTCTTCTCGAAAGCTGGCAAGGTGAGGGATGTTCGTTTGATCATGGATAGGAATTCAAGGCGGTCTAAAGGAGTTGGGTATATTGAATTTTATGATGTGATGTCGGTGCCAATGGCAATTGCTCTTTCTGGCCAACTGCTTCTGGGACAACCTGTAATGGTCAAACCTTCAGAGGCTGAAAAAAACCTTGTTCAGTCTAATACCACCAGTGGAGGTGCAGGAGTAGTAGGACCATATGGAGCAGTGGACAGGAAACTGTATGTGGGGAACCTTCACTTTAACATGACTGAAGGTCAGCTGAGAGAGATTTTTGAGCCGTTTGGTCCAGTGGAGCTTGTTCAGCTTCCCCTTGACATGGAGACAGGACATTGCAAGGGTTTTGGCTTTGTACAATTTGCTAACCTCGAACATGCCAAGGCAGCTCAGAGTTTGAATGGAAAATTAGAAATTGCTGGTAGGATTATCAAGGTTTCATCGGTAACAGATCATGTTGGAGGTCAGGATACAACTGCGAAATCTGCAGATTTGGATGATGATGAAGGTGGCTTGTCATTGAATGCTCAATCAAGAGCGATGCTCATGGCCAAGTTGGATCGCTCTGGTATTGCTACAAGCATTGCAGGGTCTATGGGTGGTGTGCCTCTTGTGAATGGCTCGGCCCCTGCTCAGCAGGCTGTTAGTTTGCCAGTTGGGGGTCCAGGTATAGTACCTGCATCAGCTCTCCCAACAGCCATTGTGCCTACCCCAGGAGCAGAGCCAGTTGGAACTCCCAGCGAGTGTTTGCTGTTGAAGAATATGTTTGATCCAACTACTGAGACAGAACCAGATTTCGATGATGATATTAAGGAGGATGTTGCAGAAGAATGTTCTAAATTTGGTCGGGTGAAGCATATTTATGTTGACAGAGATAGCGCAGGTTTTGTGTATCTACGGTTTGAAACAGTGCAAGCAGCAAGTGCCGCTCAACAGGCAATGCACTTGAGATGGTTTGCCCGCAGGTTGATTTCAGCGGTGTTCATGCAACCGCAGGTATATGAAGCGAAGTTTAGAGGAGAAGCTTGA 1707 0.4733 MDFDEYDYLEKTVEEQGGQDLTKSKGKNDKSERAYRKRDVDDDVDGEDKKSKRSRGDDENGSRKDREDREKERSSREKERHRSSRDREKDGDRERERRSSRERDREKERDKEREREKRDKERDRERRDRDKERERERERREREKEKEREEKERSRRSKSRSDRDRERERELESRDSRRFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTSGGAGVVGPYGAVDRKLYVGNLHFNMTEGQLREIFEPFGPVELVQLPLDMETGHCKGFGFVQFANLEHAKAAQSLNGKLEIAGRIIKVSSVTDHVGGQDTTAKSADLDDDEGGLSLNAQSRAMLMAKLDRSGIATSIAGSMGGVPLVNGSAPAQQAVSLPVGGPGIVPASALPTAIVPTPGAEPVGTPSECLLLKNMFDPTTETEPDFDDDIKEDVAEECSKFGRVKHIYVDRDSAGFVYLRFETVQAASAAQQAMHLRWFARRLISAVFMQPQVYEAKFRGEA 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2086 568 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 266 IPR000504 GO:0003723
Acco04g2086 568 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 301 370 IPR000504 GO:0003723
Acco04g2086 568 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 498 549 IPR000504 GO:0003723
Acco04g2086 568 Coils Coil 128 157 - -
Acco04g2086 568 CDD RRM1_RBM39_like 198 270 - -
Acco04g2086 568 FunFam Splicing factor CC1-like 124 282 - -
Acco04g2086 568 SUPERFAMILY RNA-binding domain, RBD 190 289 IPR035979 GO:0003676
Acco04g2086 568 Gene3D - 295 390 IPR012677 -
Acco04g2086 568 FunFam Splicing factor CC1-like 283 388 - -
Acco04g2086 568 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 274 IPR000504 GO:0003723
Acco04g2086 568 Gene3D - 469 567 IPR012677 -
Acco04g2086 568 SUPERFAMILY RNA-binding domain, RBD 299 557 IPR035979 GO:0003676
Acco04g2086 568 MobiDBLite consensus disorder prediction 10 196 - -
Acco04g2086 568 ProSitePatterns Rrf2-type HTH domain signature. 412 430 IPR030489 -
Acco04g2086 568 CDD RRM2_RBM23_RBM39 301 378 - -
Acco04g2086 568 MobiDBLite consensus disorder prediction 1 196 - -
Acco04g2086 568 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 392 492 IPR029123 -
Acco04g2086 568 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 564 IPR006509 GO:0003723|GO:0005634|GO:0006397
Acco04g2086 568 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 474 557 IPR000504 GO:0003723
Acco04g2086 568 NCBIfam splicing factor, CC1-like family 76 564 IPR006509 GO:0003723|GO:0005634|GO:0006397
Acco04g2086 568 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 299 377 IPR000504 GO:0003723
Acco04g2086 568 SMART rrm1_1 300 373 IPR000504 GO:0003723
Acco04g2086 568 SMART rrm1_1 475 552 IPR000504 GO:0003723
Acco04g2086 568 SMART rrm1_1 198 270 IPR000504 GO:0003723
Acco04g2086 568 CDD RRM3_RBM39_like 473 555 - -
Acco04g2086 568 Gene3D - 127 283 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2086 Acco-ChrAcco04 36583211 36595258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2086 271 372 Eukaryotic Initiation Factors Gene Family AT4G34110 34.951 1.26e-07 52.8