Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Acco04g2086 | ATGGACTTTGACGAGTACGATTACCTGGAAAAGACAGTGGAGGAGCAGGGAGGTCAAGATTTGACGAAGAGCAAGGGAAAAAACGATAAGAGTGAGAGGGCTTACAGGAAGCGTGATGTCGACGATGACGTTGACGGTGAAGACAAGAAGAGCAAGAGGTCCAGGGGCGACGACGAGAATGGGTCGAGGAAAGATCGTGAGGACCGCGAGAAAGAACGTTCTAGTCGAGAAAAGGAACGGCATAGGAGTAGCAGAGACAGAGAGAAGGATGGTGATAGGGAGCGAGAGAGGAGGAGTAGTAGGGAGAGAGATAGGGAGAAAGAGAGAGATAAGGAGAGGGAAAGAGAGAAAAGGGATAAAGAGAGGGATAGGGAGAGAAGAGACAGAGACAAGGAGAGGGAAAGAGAACGGGAGAGAAGGGAGAGAGAGAAGGAGAAGGAAAGGGAGGAGAAAGAGAGGTCCAGGAGAAGCAAAAGTCGTTCTGATCGAGATAGAGAAAGAGAACGAGAATTGGAGTCTAGAGACAGCCGGAGATTTAGGGATAAGAAAGAGGCTGTGGAACCTGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCATACCAGATGCCTCTAAAAGCAACAGAGAGAGATGTTTATGAATTCTTCTCGAAAGCTGGCAAGGTGAGGGATGTTCGTTTGATCATGGATAGGAATTCAAGGCGGTCTAAAGGAGTTGGGTATATTGAATTTTATGATGTGATGTCGGTGCCAATGGCAATTGCTCTTTCTGGCCAACTGCTTCTGGGACAACCTGTAATGGTCAAACCTTCAGAGGCTGAAAAAAACCTTGTTCAGTCTAATACCACCAGTGGAGGTGCAGGAGTAGTAGGACCATATGGAGCAGTGGACAGGAAACTGTATGTGGGGAACCTTCACTTTAACATGACTGAAGGTCAGCTGAGAGAGATTTTTGAGCCGTTTGGTCCAGTGGAGCTTGTTCAGCTTCCCCTTGACATGGAGACAGGACATTGCAAGGGTTTTGGCTTTGTACAATTTGCTAACCTCGAACATGCCAAGGCAGCTCAGAGTTTGAATGGAAAATTAGAAATTGCTGGTAGGATTATCAAGGTTTCATCGGTAACAGATCATGTTGGAGGTCAGGATACAACTGCGAAATCTGCAGATTTGGATGATGATGAAGGTGGCTTGTCATTGAATGCTCAATCAAGAGCGATGCTCATGGCCAAGTTGGATCGCTCTGGTATTGCTACAAGCATTGCAGGGTCTATGGGTGGTGTGCCTCTTGTGAATGGCTCGGCCCCTGCTCAGCAGGCTGTTAGTTTGCCAGTTGGGGGTCCAGGTATAGTACCTGCATCAGCTCTCCCAACAGCCATTGTGCCTACCCCAGGAGCAGAGCCAGTTGGAACTCCCAGCGAGTGTTTGCTGTTGAAGAATATGTTTGATCCAACTACTGAGACAGAACCAGATTTCGATGATGATATTAAGGAGGATGTTGCAGAAGAATGTTCTAAATTTGGTCGGGTGAAGCATATTTATGTTGACAGAGATAGCGCAGGTTTTGTGTATCTACGGTTTGAAACAGTGCAAGCAGCAAGTGCCGCTCAACAGGCAATGCACTTGAGATGGTTTGCCCGCAGGTTGATTTCAGCGGTGTTCATGCAACCGCAGGTATATGAAGCGAAGTTTAGAGGAGAAGCTTGA | 1707 | 0.4733 | MDFDEYDYLEKTVEEQGGQDLTKSKGKNDKSERAYRKRDVDDDVDGEDKKSKRSRGDDENGSRKDREDREKERSSREKERHRSSRDREKDGDRERERRSSRERDREKERDKEREREKRDKERDRERRDRDKERERERERREREKEKEREEKERSRRSKSRSDRDRERERELESRDSRRFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTSGGAGVVGPYGAVDRKLYVGNLHFNMTEGQLREIFEPFGPVELVQLPLDMETGHCKGFGFVQFANLEHAKAAQSLNGKLEIAGRIIKVSSVTDHVGGQDTTAKSADLDDDEGGLSLNAQSRAMLMAKLDRSGIATSIAGSMGGVPLVNGSAPAQQAVSLPVGGPGIVPASALPTAIVPTPGAEPVGTPSECLLLKNMFDPTTETEPDFDDDIKEDVAEECSKFGRVKHIYVDRDSAGFVYLRFETVQAASAAQQAMHLRWFARRLISAVFMQPQVYEAKFRGEA | 568 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Acco04g2086 | 568 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 204 | 266 | IPR000504 | GO:0003723 | |
Acco04g2086 | 568 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 301 | 370 | IPR000504 | GO:0003723 | |
Acco04g2086 | 568 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 498 | 549 | IPR000504 | GO:0003723 | |
Acco04g2086 | 568 | Coils | Coil | 128 | 157 | - | - | |
Acco04g2086 | 568 | CDD | RRM1_RBM39_like | 198 | 270 | - | - | |
Acco04g2086 | 568 | FunFam | Splicing factor CC1-like | 124 | 282 | - | - | |
Acco04g2086 | 568 | SUPERFAMILY | RNA-binding domain, RBD | 190 | 289 | IPR035979 | GO:0003676 | |
Acco04g2086 | 568 | Gene3D | - | 295 | 390 | IPR012677 | - | |
Acco04g2086 | 568 | FunFam | Splicing factor CC1-like | 283 | 388 | - | - | |
Acco04g2086 | 568 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 197 | 274 | IPR000504 | GO:0003723 | |
Acco04g2086 | 568 | Gene3D | - | 469 | 567 | IPR012677 | - | |
Acco04g2086 | 568 | SUPERFAMILY | RNA-binding domain, RBD | 299 | 557 | IPR035979 | GO:0003676 | |
Acco04g2086 | 568 | MobiDBLite | consensus disorder prediction | 10 | 196 | - | - | |
Acco04g2086 | 568 | ProSitePatterns | Rrf2-type HTH domain signature. | 412 | 430 | IPR030489 | - | |
Acco04g2086 | 568 | CDD | RRM2_RBM23_RBM39 | 301 | 378 | - | - | |
Acco04g2086 | 568 | MobiDBLite | consensus disorder prediction | 1 | 196 | - | - | |
Acco04g2086 | 568 | Pfam | linker between RRM2 and RRM3 domains in RBM39 protein | 392 | 492 | IPR029123 | - | |
Acco04g2086 | 568 | PANTHER | SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED | 1 | 564 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
Acco04g2086 | 568 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 474 | 557 | IPR000504 | GO:0003723 | |
Acco04g2086 | 568 | NCBIfam | splicing factor, CC1-like family | 76 | 564 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
Acco04g2086 | 568 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 299 | 377 | IPR000504 | GO:0003723 | |
Acco04g2086 | 568 | SMART | rrm1_1 | 300 | 373 | IPR000504 | GO:0003723 | |
Acco04g2086 | 568 | SMART | rrm1_1 | 475 | 552 | IPR000504 | GO:0003723 | |
Acco04g2086 | 568 | SMART | rrm1_1 | 198 | 270 | IPR000504 | GO:0003723 | |
Acco04g2086 | 568 | CDD | RRM3_RBM39_like | 473 | 555 | - | - | |
Acco04g2086 | 568 | Gene3D | - | 127 | 283 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Acco04g2086 | Acco-ChrAcco04 | 36583211 | 36595258 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Acco04g2086 | 271 | 372 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 34.951 | 1.26e-07 | 52.8 |