Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1962 ATGGGTGCTACGGGCTCCAAGCTAGAGAAAGCTCTTGGAGACCAATTTCCTGAGGGCGAGCGTTACTTTGGTCTCGAGAACTTCGGCAATACTTGTTACTGCAACAGCGTTTTGCAGGCACTGTACTTTTGTGTTCCATTCCGGGAACAATTGCTAGAGTATTATGAAAATATTAAAACCCCAGGGGACGCGGAAGAAAATCTTTTAACATGCTTAGCAGACTTATTTTCTCAGATAACTTCCCAGAAGAAGAAAACAGGTGTCATTGCTCCCAAGCGATTTGTGCAGAGGTTAAAAAAACAGAATGAACTCTTTCGAAGCTATATGCACCAGGATGCACACGAATTCTTGAACTTTTTGTTAAATGAACTTGTGGACATTTTGGAGAAAGAGGCACAGGCTGCAAAAAGTGATCAAGAGACCTCACCCCCTTCTGATCCTGCAAAAGTACCTGAGAATGGTTTAGCTAATGGTGGTAAAAAGGATCCTTTAGTTACGTGGGTGCACAAAAATTTTCAGGGTATACTCACCAATGAGACAAGGTGCTTACGTTGTGAAACAGTGACGGCTAGGGATGAAACATTTTTTGACTTGAGCCTTGATATTGAGCAGAACAGTTCAATCACAAGCTGTTTGAAAAACTTCAGTTCCACTGAGACTCTGAATGCTGAAGACAAATTTTTTTGTGACAAGTGCTGCAGTTTGCAAGAAGCTCAGAAGAGGATGAAAATAAAGAAACCACCTCACATCTTGGTCATCCATCTCAAGCGGTTCAAGTACGTCGAACAGTTGGGTCGAAACAAGAAGCTATCTTACAGGGTTGTCTTCCCTCTTGAGCTCAAGTTGGGTAACACCGTAGAAGATGCAGACATCGAGTATTCCCTATTTGCAGTGGTTGTTCATGTTGGCAGCGGGCCTAACCATGGACATTATGTTAGCCTCGTGAAAAGCCATAACCACTGGTTGTTTTTTGATGACGAAAATGTCGAGATGATTGATGAGTCTGCTGTGCAGACATTCTTTGGCTCAGCACAGGAGTATTCCAGCAACACAGACCATGGGTACATTTTGTTCTACGAGAGCCTCGGCCTGGCATACGGGAACTAG 1107 0.4345 MGATGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYENIKTPGDAEENLLTCLADLFSQITSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEAQAAKSDQETSPPSDPAKVPENGLANGGKKDPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYVEQLGRNKKLSYRVVFPLELKLGNTVEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLGLAYGN 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1962 368 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 24 39 IPR018200 GO:0004843|GO:0006511
Acco04g1962 368 SUPERFAMILY Cysteine proteinases 21 360 IPR038765 -
Acco04g1962 368 MobiDBLite consensus disorder prediction 132 158 - -
Acco04g1962 368 FunFam Ubiquitin carboxyl-terminal hydrolase 3 5 361 - -
Acco04g1962 368 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 293 311 IPR018200 GO:0004843|GO:0006511
Acco04g1962 368 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 24 361 - -
Acco04g1962 368 CDD Peptidase_C19G 24 360 - -
Acco04g1962 368 Gene3D Cysteine proteinases 5 361 - -
Acco04g1962 368 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 23 362 IPR028889 -
Acco04g1962 368 Pfam Ubiquitin carboxyl-terminal hydrolase 23 359 IPR001394 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1962 Acco-ChrAcco04 33741095 33746128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1962 24 333 Miscellaneous Gene Families AT2G24640 27.987 1.06e-28 114