Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1959 ATGGGAAGATCTCCGTCCAGTGATGAGAATGGTTTGAAGAAAGGTCCTTGGACCCCTGAAGAAGATCACAAACTTGTTCACTACATTCAAAAACATGGCCATGGAAGCTGGAGATCTCTCCCAAAACTAGCTGGGCTGAACAGATGTGGGAAGAGTTGCAGGTTAAGATGGACAAACTACTTGAGACCAGACATCAAGAGAGGCAAATTTTCCGAAGAAGAAGAACAGACTATCCTCAATCTCCATGCTATCCTCGGCAACAAGTGGTCGGCAATAGCGAGGCACTTGCCTGGTCGGACTGATAATGAAATAAAGAACTTGTGGAACACTCACCTCAAGAAGAAGCTTATTCAAATGGGTTATGATCCCATGACTCACCAGCCTCGAACTGATATATTCTCTAGTCTCTCTCATCTCTTAGCTCTCGCTAATCTTAAGAACCTTCTCGATCATAATGCTTCCAGCCTTCAGTTTCTGCAACATCTTGTTCAACCTCATCATCAATCAAACCCAAATGTTAATGTTATGAACATGGACGGTTTAAGCCATCTGAACAACGTTGTCAATAATTATGACTCTTCTTCTTCCATGGCTTTTTCACACATGCCCGAGTTGACTACTCCTTCTTCTTCTACTACTACTACAATCCAAGTACCTCCTTTGATTAGTGATCAAGACCTGGTTCAAGTTCAGATCCCAGAATATAGTGCAGTGAACAAGGAAGAAGAGAGTGGTTCTTCTCCCAATAATAATTCTACGTGGCTTCACTCGTGTGTAACCACGCCGTCTCCTTCTTTTCTTCCGGCTGAGACCACGGCCGCGGTGGCGACCGTGACACATGATATCAGTAGTATTGCCGATAACTGCTCTCCGGCTACTTGTGATTTCGGAGATGTTGTGGGTCACTACAATATTTGGCCAGAGTCAGAGATGTTTCTAGATGACCCTTTATTTTTTCCATAA 963 0.4372 MGRSPSSDENGLKKGPWTPEEDHKLVHYIQKHGHGSWRSLPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQTILNLHAILGNKWSAIARHLPGRTDNEIKNLWNTHLKKKLIQMGYDPMTHQPRTDIFSSLSHLLALANLKNLLDHNASSLQFLQHLVQPHHQSNPNVNVMNMDGLSHLNNVVNNYDSSSSMAFSHMPELTTPSSSTTTTIQVPPLISDQDLVQVQIPEYSAVNKEEESGSSPNNNSTWLHSCVTTPSPSFLPAETTAAVATVTHDISSIADNCSPATCDFGDVVGHYNIWPESEMFLDDPLFFP 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1959 320 Gene3D - 69 116 - -
Acco04g1959 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Acco04g1959 320 CDD SANT 69 112 IPR001005 -
Acco04g1959 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Acco04g1959 320 FunFam Transcription factor MYB39 69 130 - -
Acco04g1959 320 CDD SANT 16 61 IPR001005 -
Acco04g1959 320 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Acco04g1959 320 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Acco04g1959 320 Gene3D - 11 67 - -
Acco04g1959 320 FunFam MYB-related transcription factor 13 66 - -
Acco04g1959 320 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Acco04g1959 320 SMART sant 66 114 IPR001005 -
Acco04g1959 320 SMART sant 13 63 IPR001005 -
Acco04g1959 320 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Acco04g1959 320 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Acco04g1959 320 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1959 Acco-ChrAcco04 33694792 33695978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1959 1 194 MYB Transcription Factor Family AT5G10280 65.094 2.10e-95 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco04g1959 Myb_DNA-binding 9.4e-17 CL0123