Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1958 ATGCAAAACACCAATTCGGTTTCTCCGGTGCCGTTGACGTCCGCCGACACCAGTGTCACTCGAACCGATCGTGCTTTGGATCCGAATATGAACTCGGATCCAAGGATTGTACTTCAGAACCTCTCGATGGTTCGAATGAGAATGGATTCTCTTCAACGTTTTCTATCTGAATCTACTTCTACCAAAGCTTTAGTCAGAAAGGACCAGATGGATATGGTGTCGAACGAAATCGTCTCCGCTGTCCACCAGATTATTGTCAACGGCGCCGCCCTGGTCTCCTACTCTCAGAATTTCACGGCCGGCGGCGCGTCGGTATCAACAGCGTCGGGAGACTTACCGGAGCCACCTGATATGGTTTATTCGACGAGGCCAGGGTTTGATTATTCTGGCTCTGAGAAAGGTAATTTGAAAACTGAGGTTATGGATTATGATGGAGTGAAAGATGATGACGAAAATTGTGAGATCGTGGAGCTCGACGCCGTGGAATTGCTGGCGGAGCACCTTCATTTCTGCGAAATCTGCGGGAAAGGATTCAGGCGCGACGCGAATTTGCGGATGCACATGCGTGCACATGGAAACCAGTTCAAAACCCCTGAAGCGTTAGCGAAGAAGCCCTCTGATAAATCCGAAGTCGCTGGTCGCAAAACGGTGCGATTCTCTTGCCCATTCGAAGGTTGCAATCGGAACAAGGCGCACAAGAAATTCCGGCCTCTGAAATCGATCATTTGCGTGAAGAATCACTTCAAAAGAAGCCATTGTCCGAAAATGTATTACTGCAATCGATGCCACAAGAAGACTTTCTCTGTGCTTTCAGATTTGAAGAGCCATATGAAGCATTGTGGGGAATCATCAAAGTGGAAGTGCTCTTGTGGGACCACATTTTCAAGGAAGGACAAATTGTTTGGTCACATAGCTCTGTTTGATGGGCATATGCCAACTCTTTCTGGGGATGAAGAAGATAAAGGGAAGCAAGTTGTAAAAGAAGACGACGAGGATATGAACACAATGTTAAAGGAAGAAGAATCAAAGCTAAATTATTTGGATGAAGATTTACCAGAAGGATTCTTTGATGATTTAGATGAATTTGGCAAATACTCTTTGGATGAAGCTCTGGGCTTCTCTAACACTGCAACTTATGGACGACTTCACTGA 1152 0.4592 MQNTNSVSPVPLTSADTSVTRTDRALDPNMNSDPRIVLQNLSMVRMRMDSLQRFLSESTSTKALVRKDQMDMVSNEIVSAVHQIIVNGAALVSYSQNFTAGGASVSTASGDLPEPPDMVYSTRPGFDYSGSEKGNLKTEVMDYDGVKDDDENCEIVELDAVELLAEHLHFCEICGKGFRRDANLRMHMRAHGNQFKTPEALAKKPSDKSEVAGRKTVRFSCPFEGCNRNKAHKKFRPLKSIICVKNHFKRSHCPKMYYCNRCHKKTFSVLSDLKSHMKHCGESSKWKCSCGTTFSRKDKLFGHIALFDGHMPTLSGDEEDKGKQVVKEDDEDMNTMLKEEESKLNYLDEDLPEGFFDDLDEFGKYSLDEALGFSNTATYGRLH 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1958 383 Gene3D Classic Zinc Finger 154 220 - -
Acco04g1958 383 SMART c2h2final6 169 191 IPR013087 -
Acco04g1958 383 SMART c2h2final6 219 252 IPR013087 -
Acco04g1958 383 SMART c2h2final6 257 279 IPR013087 -
Acco04g1958 383 Pfam Zinc finger, C2H2 type 170 191 IPR013087 -
Acco04g1958 383 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 25 342 IPR044300 GO:0010044|GO:0010447
Acco04g1958 383 MobiDBLite consensus disorder prediction 1 33 - -
Acco04g1958 383 ProSiteProfiles Zinc finger C2H2 type domain profile. 169 196 IPR013087 -
Acco04g1958 383 FunFam Zinc finger 45-like 166 192 - -
Acco04g1958 383 SUPERFAMILY beta-beta-alpha zinc fingers 166 192 IPR036236 -
Acco04g1958 383 ProSitePatterns Zinc finger C2H2 type domain signature. 171 191 IPR013087 -
Acco04g1958 383 Gene3D Classic Zinc Finger 255 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1958 Acco-ChrAcco04 33651977 33653128 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1958 154 318 C2H2 Transcription Factor Family AT1G34370 63.690 9.31e-75 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco04g1958 zf-C2H2 0.00027 CL0361