Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1955 ATGCGATCGACGGCGGAGAACATCGGATCACAGGAAAACTCTACCACCGAAGCGCTTCGACCTCCTCCAGCCAATTCGAGAATTCCAATTTCTCGAACCTCATCCTCGTATTGCTCTGACGCTCTCCTCGATTCTTTGTTCTCCACTCTATACTCTTCATTTACTCTCTCACTTTCGCTCCTTCATTCCTGTTTATCTTTCCCTGCCCTTCCCACTCTCTCTACTTTCAGAGAGAGCGAAGCGGTCCAGGTTAAGGGAAAGTCCAGCACTAACAGGTTTGTCTATGAATATTGGATGGCTGTTACACCTTTTGGAAGCGCCTCTGTTGCACAATGGAGAGCGTGTCCTCAATTTTTCTCGAGATCCTGTTTGACTGGCAAAAGTGTATCATCTGGATACAATGTTTCAAGCAGGGTTAGTTTTGTGGCTTCTGTGAGTTCAAATTTTTTGTCTCGGGGTTCCTTGCACCTCCTATTTGGCCTGGATTCATCTCAAACATTACATCATCGCAGGGGATCAAGGTTGATAGTTAGAGCAGATAGAGATTACTATTCTGTCCTTGGGGTGTCAAGAAATGCCAGTAAATCTGAAATTAAGAGCGCTTATCGAAAACTTGCCCGGAATTATCACCCAGATGTGAACAAAGAAGCTGGAGCAGAACAGAAATTTAAGGAAATCAGCAATGCATATGAGGTCTTATCAGACGATGAGAAGAGATCCATATATGACACATATGGAGAGGCTGGGCTTAAAGGTTCTGGAATGGGCATGGGAGATTTCAGCAATCCTTTTGATCTATTTGAGACACTGTTTGAGGGCATGGGCATGAATCGTGGCATGAACAAGAGAGGCTCTTGGAATGGAGCTGCTGATGGTGAAGATGAATATTACAGTCTTGTCTTGAACTTTAAAGAAGCAGTTTTTGGGGTAGAAAAAGAGATAGAGATAAGCCGTCTAGAGAATTGTGGAACTTGCAATGGTACGGGGGCTAAGCCTGGGACCACGCCAACCAGATGTAGCACCTGTGGAGGCCAAGGCCAGGTTGTCACGTCAACAAGGACACCCTTGGGTATTTTCCAGCAGTCGATGATATGCTCTGCATGTAATGGAGCTGGGGAAATTTCAACACCTTGCAGTGCATGTTCTGGGGATGGTCGACTGAGGAGAACAAAGCGGATAAGCCTGAAAGTTCCACCTGGTGTGGATTCTGGTAGCCGTTTAAGGGTCCGAAATGAAGGGAATGCCGGAAGACGAGGTGGTTCTCCAGGTGACCTCTTTGTTGTCATTGAAGTCGTTCCTGATCCTGTCCTCAAGCGTGACGACACTAACATCCTCTACACTTGTAAGGTGTCATACATTGATGCGATATTGGGAACTACAATCAAGGTCCCTACCGTAGATGGAACAGTTGATCTAAAAATCCCGGCTGGGACCCAACCCAACACGACACTCGTCATGGCCAAGAAAGGTGTCCCCTTTCTGAATAAAAGCAGCATGAGGGGTGATCAGTTGGTTCGTGTGCAAGTTGAAATACCTAAGAAACTCAACAGTGAAGAGAGGAAGCTTATTGAGGAGCTTGCTGATTTAAGCAAAGGCAAGGCTGCGGCAGGTAAAAGATAA 1620 0.4611 MRSTAENIGSQENSTTEALRPPPANSRIPISRTSSSYCSDALLDSLFSTLYSSFTLSLSLLHSCLSFPALPTLSTFRESEAVQVKGKSSTNRFVYEYWMAVTPFGSASVAQWRACPQFFSRSCLTGKSVSSGYNVSSRVSFVASVSSNFLSRGSLHLLFGLDSSQTLHHRRGSRLIVRADRDYYSVLGVSRNASKSEIKSAYRKLARNYHPDVNKEAGAEQKFKEISNAYEVLSDDEKRSIYDTYGEAGLKGSGMGMGDFSNPFDLFETLFEGMGMNRGMNKRGSWNGAADGEDEYYSLVLNFKEAVFGVEKEIEISRLENCGTCNGTGAKPGTTPTRCSTCGGQGQVVTSTRTPLGIFQQSMICSACNGAGEISTPCSACSGDGRLRRTKRISLKVPPGVDSGSRLRVRNEGNAGRRGGSPGDLFVVIEVVPDPVLKRDDTNILYTCKVSYIDAILGTTIKVPTVDGTVDLKIPAGTQPNTTLVMAKKGVPFLNKSSMRGDQLVRVQVEIPKKLNSEERKLIEELADLSKGKAAAGKR 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1955 539 CDD DnaJ 182 235 IPR001623 -
Acco04g1955 539 ProSiteProfiles dnaJ domain profile. 182 246 IPR001623 -
Acco04g1955 539 FunFam Molecular chaperone DnaJ 314 390 - -
Acco04g1955 539 PRINTS DnaJ domain signature 238 257 IPR001623 -
Acco04g1955 539 PRINTS DnaJ domain signature 184 202 IPR001623 -
Acco04g1955 539 PRINTS DnaJ domain signature 202 217 IPR001623 -
Acco04g1955 539 PRINTS DnaJ domain signature 218 238 IPR001623 -
Acco04g1955 539 FunFam Chaperone protein dnaJ 1, mitochondrial 432 539 - -
Acco04g1955 539 SUPERFAMILY HSP40/DnaJ peptide-binding domain 437 523 IPR008971 GO:0006457|GO:0051082
Acco04g1955 539 FunFam Putative Mitochondrial DnaJ chaperone 379 427 - -
Acco04g1955 539 ProSiteProfiles Zinc finger CR-type profile. 309 390 IPR001305 GO:0031072|GO:0051082
Acco04g1955 539 Pfam DnaJ C terminal domain 297 512 IPR002939 -
Acco04g1955 539 SUPERFAMILY Chaperone J-domain 178 276 IPR036869 -
Acco04g1955 539 Pfam DnaJ domain 182 243 IPR001623 -
Acco04g1955 539 Gene3D - 322 385 - -
Acco04g1955 539 Gene3D - 432 538 - -
Acco04g1955 539 Gene3D DnaJ domain 179 283 IPR036869 -
Acco04g1955 539 NCBIfam molecular chaperone DnaJ 182 528 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Acco04g1955 539 SUPERFAMILY HSP40/DnaJ peptide-binding domain 290 444 IPR008971 GO:0006457|GO:0051082
Acco04g1955 539 Hamap Chaperone protein DnaJ [dnaJ]. 179 535 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Acco04g1955 539 CDD DnaJ_zf 322 385 IPR001305 GO:0031072|GO:0051082
Acco04g1955 539 CDD DnaJ_C 293 515 - -
Acco04g1955 539 ProSitePatterns Nt-dnaJ domain signature. 223 242 IPR018253 -
Acco04g1955 539 SMART dnaj_3 181 238 IPR001623 -
Acco04g1955 539 MobiDBLite consensus disorder prediction 1 31 - -
Acco04g1955 539 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 309 388 IPR036410 -
Acco04g1955 539 Gene3D - 292 427 - -
Acco04g1955 539 Pfam DnaJ central domain 322 385 IPR001305 GO:0031072|GO:0051082
Acco04g1955 539 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 132 535 - -
Acco04g1955 539 FunFam Chaperone protein dnaJ A6 chloroplastic 179 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1955 Acco-ChrAcco04 33592259 33599074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1955 183 245 C2H2 Transcription Factor Family AT1G74250 46.377 6.95e-10 59.7