LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco04g1940	ATGGAACGGTATGAAATAATCAAAGATATTGGGTCTGGCAATTTCGGTGTCGCCAAGCTGGTCAGAGAGAAACGTACCGGCGAGTTCTTCGCGGTCAAGTTCATTGAGAGAGGTTCCAAGATTGATGAGCATGTACAGAGAGAGATCACAAATCACAGATCCTTGAAACATCCTAACATCATTCGATTCAAGGAAGTTTTGCTGACTCCAACTCATCTAGCTATAGTCATGGAATATGCTGCTGGGGGAGAGCTTTTTGAAAGAATATGTAATGCGGGAAGATTCTGTGAGGACGAGGCAAGATACTTCTTTCAACAATTGATCTCTGGTGTGAGCTATTGTCATTCCATGGAAATCTGTCACAGAGATCTCAAGCTGGAAAACACATTATTAGATGGAAGCCCAGCTCCAAGACTTAAGATATGTGACTTTGGTTACTCAAAGTCTTCTGTTCTGCACTCTCAGCCTAATTCTACCGTAGGAACACCTGCATATATTGCACCAGAAGTATTATCAAGAAAGGAATATGATGGCAAGATTGCAGATGTTTGGTCTTGTGGGGTGACTTTATATGTGATGCTTGCTGGAGCTTATCCTTTTGAAGATCCGGAAGACCCAAGAAACTTCAGAAAAACACTTCAGCGAATCCTTAGCGTCCACTATTCCATTCCAGATTATGTTCGTGTTTCCCAAGAATGTAGACACCTTTTATCCAGAATATTTGTGGCCAGCCCTGAAAAGAGAATCACAATCCCAGAAATAAAGAAGCATCCATGGTTTCTGTATAACCTGCCAATGGAATTTATGAACGAAGGGGCAAGTGAGATGGAAAAGCTAGAAAGTGATGGTGTAAATAATGTAGAAGAAGAAGAGGCAAGTCAGAGCATAGAAGAAATACTTTCCATAATTCAAGAAGCTAGAAAAGCAGGGGAAGGTCCTAATACTAATAAACTTGGAGGGTGCTTCGTTGATGGAAGCATGGATCTTGATGATATTGACGCAGATGCTGACATTGATGATGTTGAAACTAGTGGTGATTTTGTCTGTGCTATTTAG	1056	0.411	MERYEIIKDIGSGNFGVAKLVREKRTGEFFAVKFIERGSKIDEHVQREITNHRSLKHPNIIRFKEVLLTPTHLAIVMEYAAGGELFERICNAGRFCEDEARYFFQQLISGVSYCHSMEICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPNSTVGTPAYIAPEVLSRKEYDGKIADVWSCGVTLYVMLAGAYPFEDPEDPRNFRKTLQRILSVHYSIPDYVRVSQECRHLLSRIFVASPEKRITIPEIKKHPWFLYNLPMEFMNEGASEMEKLESDGVNNVEEEEASQSIEEILSIIQEARKAGEGPNTNKLGGCFVDGSMDLDDIDADADIDDVETSGDFVCAI	351

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco04g1940	351	SUPERFAMILY	Protein kinase-like (PK-like)	2	269	IPR011009	-
	Acco04g1940	351	ProSiteProfiles	Protein kinase domain profile.	4	260	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco04g1940	351	SMART	serkin_6	4	260	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco04g1940	351	ProSitePatterns	Protein kinases ATP-binding region signature.	10	33	IPR017441	GO:0005524
	Acco04g1940	351	FunFam	Serine/threonine-protein kinase SAPK2	1	79	-	-
	Acco04g1940	351	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	119	131	IPR008271	GO:0004672\|GO:0006468
	Acco04g1940	351	PANTHER	SERINE/THREONINE KINASE	2	285	-	-
	Acco04g1940	351	FunFam	Serine/threonine-protein kinase SRK2E	80	268	-	-
	Acco04g1940	351	Gene3D	Phosphorylase Kinase; domain 1	1	79	-	-
	Acco04g1940	351	Pfam	Protein kinase domain	4	260	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco04g1940	351	CDD	STKc_SnRK2	3	259	-	-
	Acco04g1940	351	Gene3D	Transferase(Phosphotransferase) domain 1	80	265	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco04g1940	Acco-ChrAcco04	33274922	33278922	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco04g1940	3	290	CBL-interacting serine-threonine protein kinases	AT5G25110	41.528	4.16e-69	223

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_OST1L	Acco04g1940		Pkinase	5.9e-72	CL0016