Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1925 ATGAAGAGATCACTTGAAAGCTCCGATTCTTTGGGTGCTTTGATGACTATGTGCCCATCCAGAGATGAAAACAGTCCGAGGAACAATAACAATAATAATCATGTGTATGGGAGGGATCATCAGTTCCAAGCCATGATGATGGATGGAGTAATGGACGAGGAAGGTTGTGTGGAAGAATCAAGCCATTTGATGATGTCGGAGAAGAAACGTCGTCTGAGTATTGACCAAGTCAAAGCTTTAGAGAAGAACTTCGAGGTCGAAAACAAGCTTGAGCCTGAGAGGAAAGTGAAGCTTGCTGAAGAACTTGGGTTACAGCCTCGTCAAGTAGCTGTTTGGTTCCAAAACCGCCGTGCACGGTGGAAGACCAAGCAGTTAGAGAGAGATTATGGCGTTCTTAAAGCCAATTATGACGCCCTCAAAGTTAACTTGGACACTCTCCAACAGGACAACAAAGCATTGTTCGAAGAGATTAAGGAATTGAAATCTAGATTACAAGAGGAGCAAACAGAGAGTGGTATCTCAGTGAAGGGAGAGGAGATAACGGGGTTTGATACCGACGAGAAAAAGGCTGACCGGATTGAATTACCGCCGGCTGAAACCTCGATTCTTATTGAATCACAGTGCAAGGAGGACTTGAATTATGAGTGCTTTAATGGAGTCGCCGGAGGTGGTGGTGGTGCTTCACTCGTGGCGACGGTGGATCATTTCAAAGACGGAGCTTCCGATAGCGACTCTAGCGCAATCTTGAACGAAGATAACAGTCCCAACGCGGGCATTTCGTCGCCGGAAGCTCTTCAGAGCCACCACCAGCACCACCACCATCTTTTGATTTCTCCATCGTCTCCGCCGCTTTCCATGAACTGCTTTCAATTCCAGAAATCAACATACCAGAGTCAGTTTGTTAAGATGGAAGAACATAACTTCTTCAGCGCCGAAGAAGCCTGCAATTTCTTCTCCGAAGATCAAGCACCCACACTCCATTGGTACTCTTCAGATAATCAGTGGAGCTAA 1011 0.4619 MKRSLESSDSLGALMTMCPSRDENSPRNNNNNNHVYGRDHQFQAMMMDGVMDEEGCVEESSHLMMSEKKRRLSIDQVKALEKNFEVENKLEPERKVKLAEELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKVNLDTLQQDNKALFEEIKELKSRLQEEQTESGISVKGEEITGFDTDEKKADRIELPPAETSILIESQCKEDLNYECFNGVAGGGGGASLVATVDHFKDGASDSDSSAILNEDNSPNAGISSPEALQSHHQHHHHLLISPSSPPLSMNCFQFQKSTYQSQFVKMEEHNFFSAEEACNFFSEDQAPTLHWYSSDNQWS 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1925 336 Pfam Homeobox associated leucine zipper 123 165 IPR003106 GO:0006355|GO:0043565
Acco04g1925 336 CDD homeodomain 68 124 IPR001356 GO:0003677
Acco04g1925 336 MobiDBLite consensus disorder prediction 243 265 - -
Acco04g1925 336 SMART HOX_1 66 127 IPR001356 GO:0003677
Acco04g1925 336 MobiDBLite consensus disorder prediction 21 35 - -
Acco04g1925 336 Gene3D - 65 130 - -
Acco04g1925 336 SUPERFAMILY Homeodomain-like 58 125 IPR009057 -
Acco04g1925 336 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 37 308 IPR045224 GO:0003700
Acco04g1925 336 PRINTS Lambda-repressor HTH signature 94 103 IPR000047 GO:0003677
Acco04g1925 336 PRINTS Lambda-repressor HTH signature 103 119 IPR000047 GO:0003677
Acco04g1925 336 Coils Coil 129 170 - -
Acco04g1925 336 FunFam Homeobox-leucine zipper protein HAT5 61 125 - -
Acco04g1925 336 ProSitePatterns 'Homeobox' domain signature. 98 121 IPR017970 GO:0000981|GO:0006355
Acco04g1925 336 MobiDBLite consensus disorder prediction 241 276 - -
Acco04g1925 336 ProSiteProfiles 'Homeobox' domain profile. 63 123 IPR001356 GO:0003677
Acco04g1925 336 MobiDBLite consensus disorder prediction 1 35 - -
Acco04g1925 336 Pfam Homeodomain 68 121 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1925 Acco-ChrAcco04 32726978 32728352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1925 1 335 Homeobox Transcription Factor Family AT2G22430 44.633 9.86e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Acco04g1925 Homeodomain 4.4e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g1925 04 32726978 32728352 Acco04g1925 04 32726978 32728352 CCT
Acco04g1925 04 32726978 32728352 Acco04g1925 04 32726978 32728352 ECH