Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1920 ATGCTTCCTCGTTCTATCAGACAAACCCTTATCCAAAAATCCAATGCTCCCCTCAGACAACGCTTTCCCCTCTCCGTTTTCGAATTTTTCCGACGCGTCTTCTCTGCAAAGAAAGCTGATGGGGGCTCAAGGACGGAGGAAGAAGAAAGAGTTTACTCATGGTTATATACTTTGGCTCGCTCTGAAAGAAACTTGGTCTTCGAGTACGTTCGTTCAACCGAAAGAGGCTTAAGTTTCGCCGAAGCAGAGAGGCGACTGAAGGAAAATGGACCAAATGTTCTTTATGAACATACTTATCCAAAATGGTGGCATCTTCTATGGAGTGCACTTTTTCATCCTTTTAATATCATTCTGATTTTCTTGTCAATCTTATCCTTCATAACCTCTGATATTTCAAATGGTTGTATCATGCTCACGCTTGTTTTCATCAGTGTTTCCCTTCGCTTCTATCAGGAGTACAGCAGTTTAAAAGCGGCCATAAAGCTTTCGGAATTTCTGAGATGCCCAATAAAAGTTCAAAGATGTGCAGGTAGAGTTGTTCAACAAGAATTAGTAGTTCAGGTTGATCAGAGGGATATAGTTCCTGGTGACATTGTTATTTTTGAACCTGGCGACCTCTTTCCTGGAGATGTCAGATTGTTATCTTCAAAGAATCTTGTTGTAAGCCAGTCCTCACTAACCGGGGAATCTTGGACGACTGATAAAACTGCCGATGTCAGAGAAAGTCTCAGCACTCCTTTGTTAGATTTAAAGAACATTTGTTTCATGGGCACAAACGTGGTATCTGGAAGTGGGACAGGCCTGGTTATATCAACAGGATCAAACACATACATGAACACTATGTTCTCAAAGATTGGGAACAAGAAGCCACCAGATGAATTTGAATATGGCCTAAGGTGGATATTTTATGCGCTTGTGGCTATCATGTTGGTGGTAGTGACAGTCATATTTCTAACAGATTACTCTGCCTCTGGTAATTTGAGCCTTAGTATCATTTTTGCCATCTCTGTGGCATCTGCCCTTACTCCTCAAATGCTTCCGCTCATCATCAACACTTGCCTTGCAAAAGGAGCACTCGCCATGGCTCGAGACCGATGTATAGTCAAAAGCTTAGCATCGATTCGCCACATGGGATCCATGGATATCCTCTGTATTGACAAGACAGGTACACTGACAATGAACCGTGCCATTATGGTAAATCATTTTGACTGCCAGGGGATAACGCAAGAGAAAGTTCTACGCTTTGCGTTCCTCAATTCTTACTTTAAGACAGATCAGAAGTATCCTCTGGATGATGCCATATTGGCTTTTGTATATTCCAATGGATTCAGATTCCAGCCCTCGAAATGGACGAAAATAGATGAGATTCCTTTTGATTTCATACGTAGAAGAGTATCTGTTATCATAGAAACAGAGTCGCCTAGTGAAGACAGACAATCTCAGTTATTTGGCAGGTTCTTGGTAACTAAAGGGGCATTGGAGGAAGTATTGAGAGTTTGTTCTTTCATTGAGAATTTCAATAACAATGAAGTTTCCGAGTTCTCCTCAGATGATTATAACAGAATTTTAGCCTTGGCTGAAGGATTGAGCGATGAAGGATTAAGAATTATCGGAGTAGCTATCAAGAAGCTAGAAATGCAAACCGGTCAAACAAGTACCAGAGGAAGACAGACCAGTGAAGAAAATGTTGAGACAGACATGGTGTTCCTTGGTGTTATAACGTTCTATGACCCTCCCAAGGACTCAGCAGAGCAAGCGCTGTGGAGTTTAGCAGAGAAAGGAGTGAAAGCAAAAGTTTTGACAGGTGACTCACTTTCCTTAGCCATGAGGGTATGCAGAGAAGTAGGAATCAGAACCACCCATGTAATCACAGGACCTGAACTAGACCAACTAGACCAAGAAACCTTCCATGAAACTGTCAAAAGAGCCACAGTACTAGCCAGGCTCACCCCAATTCAGAAACTTCGTGTAGTCCAATCCTTACAGACAATAGGAAACCACGTTGTTGGGTTCTTGGGAGACGGTATTAACGATTCACTCGCTCTTGATGCTGCAAATGTAAGCATCTCAGTGGACTCAGGTGTCGCCATTGCCAAAGACATGGCAGATATTATACTACTTGAGAAGGATCTTAATGTTCTTGTTGCAGGAGTAGAACATGGGAGACTAACTTTTGGGAACACAATGAAGTACATCAAAGCATCAGTTGTTGCAAACATAGGAAGTGTTCTTTCACTGCTCGTAGCCACCTTGATTCTTAAATTCGAGCCGGTTACTTCGAGGCAGCTTCTTACACAGAACTTCCTGTATAGTGTAGGACAGATAGCTATCCCATGGGACAAAATGGAGGAAGATTATAAGAAGACTCCTAAGAAATGGTCAGAAAGAGGGTTACCTATGTTCATACTGTGGAACAATCCTGTGTGTACTGTATGTGATGTTGGGACTCTTTTGTTTATTTTTTACTATTATAAGGCTTTTGGGGATCAAAGGTTTTGCCATTCAGCTTGGTTCATTGAAGGGTTGCTGATGCAAACTCTGATTATTCACTTGATACGTACAGAGAAAATTCCATTTGTACAGGACGTAGCTTCTTGGCCTGTGATTTGTTCCTCTGTTGTGATTTCTGCTATTGGGATTGCTCTTCCATTTACACCCATTGGAAAAGTCATGGGATTCACTAGTCTGCCTCTGTCTTATTTTGGGTTTTTGGTTGTTCTGTTTCTGGTTTATTTTACTCTTGGTCAGGTGGTCAAGAGACTTTACATTTTGGTTTATAAAATATGGCTTTGA 2793 0.4157 MLPRSIRQTLIQKSNAPLRQRFPLSVFEFFRRVFSAKKADGGSRTEEEERVYSWLYTLARSERNLVFEYVRSTERGLSFAEAERRLKENGPNVLYEHTYPKWWHLLWSALFHPFNIILIFLSILSFITSDISNGCIMLTLVFISVSLRFYQEYSSLKAAIKLSEFLRCPIKVQRCAGRVVQQELVVQVDQRDIVPGDIVIFEPGDLFPGDVRLLSSKNLVVSQSSLTGESWTTDKTADVRESLSTPLLDLKNICFMGTNVVSGSGTGLVISTGSNTYMNTMFSKIGNKKPPDEFEYGLRWIFYALVAIMLVVVTVIFLTDYSASGNLSLSIIFAISVASALTPQMLPLIINTCLAKGALAMARDRCIVKSLASIRHMGSMDILCIDKTGTLTMNRAIMVNHFDCQGITQEKVLRFAFLNSYFKTDQKYPLDDAILAFVYSNGFRFQPSKWTKIDEIPFDFIRRRVSVIIETESPSEDRQSQLFGRFLVTKGALEEVLRVCSFIENFNNNEVSEFSSDDYNRILALAEGLSDEGLRIIGVAIKKLEMQTGQTSTRGRQTSEENVETDMVFLGVITFYDPPKDSAEQALWSLAEKGVKAKVLTGDSLSLAMRVCREVGIRTTHVITGPELDQLDQETFHETVKRATVLARLTPIQKLRVVQSLQTIGNHVVGFLGDGINDSLALDAANVSISVDSGVAIAKDMADIILLEKDLNVLVAGVEHGRLTFGNTMKYIKASVVANIGSVLSLLVATLILKFEPVTSRQLLTQNFLYSVGQIAIPWDKMEEDYKKTPKKWSERGLPMFILWNNPVCTVCDVGTLLFIFYYYKAFGDQRFCHSAWFIEGLLMQTLIIHLIRTEKIPFVQDVASWPVICSSVVISAIGIALPFTPIGKVMGFTSLPLSYFGFLVVLFLVYFTLGQVVKRLYILVYKIWL 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1920 930 SMART Cation_ATPase_N_a_2 57 130 IPR004014 -
Acco04g1920 930 Pfam haloacid dehalogenase-like hydrolase 380 686 - -
Acco04g1920 930 SFLD C1.7: P-type atpase like 366 722 - -
Acco04g1920 930 ProSitePatterns E1-E2 ATPases phosphorylation site. 386 392 IPR018303 -
Acco04g1920 930 Gene3D - 396 576 IPR023299 GO:0000166
Acco04g1920 930 Pfam Cation transporting ATPase, C-terminus 756 921 IPR006068 -
Acco04g1920 930 Pfam E1-E2 ATPase 178 363 - -
Acco04g1920 930 NCBIfam HAD-IC family P-type ATPase 137 429 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Acco04g1920 930 NCBIfam HAD-IC family P-type ATPase 633 752 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Acco04g1920 930 PRINTS Magnesium-transporting ATPase signature 730 745 IPR006415 GO:0015444|GO:0015693|GO:0016020
Acco04g1920 930 PRINTS Magnesium-transporting ATPase signature 800 816 IPR006415 GO:0015444|GO:0015693|GO:0016020
Acco04g1920 930 PRINTS Magnesium-transporting ATPase signature 297 313 IPR006415 GO:0015444|GO:0015693|GO:0016020
Acco04g1920 930 PRINTS Magnesium-transporting ATPase signature 833 854 IPR006415 GO:0015444|GO:0015693|GO:0016020
Acco04g1920 930 PRINTS Magnesium-transporting ATPase signature 418 431 IPR006415 GO:0015444|GO:0015693|GO:0016020
Acco04g1920 930 PRINTS Magnesium-transporting ATPase signature 883 904 IPR006415 GO:0015444|GO:0015693|GO:0016020
Acco04g1920 930 PRINTS Magnesium-transporting ATPase signature 780 793 IPR006415 GO:0015444|GO:0015693|GO:0016020
Acco04g1920 930 PRINTS Magnesium-transporting ATPase signature 748 759 IPR006415 GO:0015444|GO:0015693|GO:0016020
Acco04g1920 930 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 377 579 IPR023299 GO:0000166
Acco04g1920 930 PANTHER CATION TRANSPORTING ATPASE 68 920 - -
Acco04g1920 930 SFLD p-type atpase 366 722 IPR044492 -
Acco04g1920 930 Gene3D - 133 880 - -
Acco04g1920 930 Pfam Cation transporter/ATPase, N-terminus 69 125 IPR004014 -
Acco04g1920 930 NCBIfam magnesium-translocating P-type ATPase 57 929 IPR006415 GO:0015444|GO:0015693|GO:0016020
Acco04g1920 930 SUPERFAMILY Calcium ATPase, transmembrane domain M 72 926 IPR023298 -
Acco04g1920 930 SUPERFAMILY Calcium ATPase, transduction domain A 178 283 IPR008250 -
Acco04g1920 930 Gene3D - 381 709 IPR023214 -
Acco04g1920 930 Gene3D - 168 272 - -
Acco04g1920 930 SUPERFAMILY HAD-like 563 720 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1920 Acco-ChrAcco04 32559167 32565433 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1920 75 795 Primary Pumps ATPases(2) AT1G10130 27.007 2.26e-66 239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g1920 04 32559167 32565433 Acco04g1920 04 32559167 32565433 ECH