Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1882 ATGACAAGTCGAACATTCCCTCGGACTCTGCTAATTGATAATCTATCTACGATCTATTTCTTGTTCAATTCCTCTAAAAGCAAGAAACATAATATGACACTTTTGTTGATGTTTATGTTCCACTTCTTGCTTCTTCTTACCCCTGCTCTCATTTCTTCTTATATCCTTCAACATCCCGAACTTGTGATCCAACAAGTTGACAAAAGCGCCAATGCGTCGAGGAGAAATCTGGGGCTTGTATCTTGTGGAACAGGAAACCCCATTGATGATTGTTGGAGATGTGATCCCAACTGGCACCACAATCGCCGGCGTCTTGCTGACTGCGCTATTGGGTTTGGCAGACACGCTGTTGGAGGAAGAGACGGCCGAACATACGTCGTCACTGACCCCAGCGACAACCCCATGAACCCTAAATCTGGAACTTTAAGACACGGCGTCATCCAAGAAGAACCCTTATGGATCATCTTCGAAAGGGACATGAACATCAAGCTCAAGATGGACCTCCTCATTAATTCCTACAAAACAATCGATGGCCGAGGAGCCACTGTGCACATCGCCGGTGGACCTTGTATCAACATACTGCGACAGACCAACATAATCATTCATGGCTTGCATATCCACGACTGCGTACAAGGTAGACCTGGGTTTGTTAGGGTATCTCCTCGTCATTATAGATTCAGTCTGAGGTCGGACGGGGATGGGGTTACGATCTGGGGCGGGACCCATGTGTGGGTAGACCATTGCTTCTTGTCTAAAAGCTATGATGGGTTGATTGATGTGGTTCATGGATCAACGGCGGTCACCATTACTAACAATTACATGACCCACCATGAAAAAGTTATGCTGCTCGGACACAGTGATTCTCATGAGAAGGACCGGAATATGCAGGTCACGGTCGCCTACAATCATTTCGGAGAAGGGCTTGGAGGAAGAATGCCCAGATGCAGGTTTGGATACTTTCATGTTGTGAACAACGATTACACTCATTGGAAACATTACGCAATAGGAGGGAGCTCAAATCCTACTATTTTCAGCCAAGGCAACAGATTTCTTGCTCCAGATGATGGAGAACACAAAGAGGTAACGAAGCACTTTGGGGCATCGCATAGTGAGTGGAAGAGATGGAATTGGAAGTCGGAAGGAGATTTGATGTTGAATGGGGCATTCTTCAAATCATCTGGGGAAGGAACGTCTTCTGTGTATAGTAAGACATTGAGCTTTTCTGCTAGACCATCAGAGTTTGTGAGCTCAATGACCTCATCAGCTGGACCTCTTGATTGCAAAAAGAGCTCATTCTGCTAA 1302 0.4585 MTSRTFPRTLLIDNLSTIYFLFNSSKSKKHNMTLLLMFMFHFLLLLTPALISSYILQHPELVIQQVDKSANASRRNLGLVSCGTGNPIDDCWRCDPNWHHNRRRLADCAIGFGRHAVGGRDGRTYVVTDPSDNPMNPKSGTLRHGVIQEEPLWIIFERDMNIKLKMDLLINSYKTIDGRGATVHIAGGPCINILRQTNIIIHGLHIHDCVQGRPGFVRVSPRHYRFSLRSDGDGVTIWGGTHVWVDHCFLSKSYDGLIDVVHGSTAVTITNNYMTHHEKVMLLGHSDSHEKDRNMQVTVAYNHFGEGLGGRMPRCRFGYFHVVNNDYTHWKHYAIGGSSNPTIFSQGNRFLAPDDGEHKEVTKHFGASHSEWKRWNWKSEGDLMLNGAFFKSSGEGTSSVYSKTLSFSARPSEFVSSMTSSAGPLDCKKSSFC 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1882 433 PANTHER PECTATE LYASE 18-RELATED 60 430 IPR045032 GO:0030570
Acco04g1882 433 PRINTS Pollen allergen Amb family signature 404 427 IPR018082 -
Acco04g1882 433 PRINTS Pollen allergen Amb family signature 131 156 IPR018082 -
Acco04g1882 433 PRINTS Pollen allergen Amb family signature 231 252 IPR018082 -
Acco04g1882 433 PRINTS Pollen allergen Amb family signature 311 330 IPR018082 -
Acco04g1882 433 PRINTS Pollen allergen Amb family signature 375 399 IPR018082 -
Acco04g1882 433 PRINTS Pollen allergen Amb family signature 333 352 IPR018082 -
Acco04g1882 433 PRINTS Pollen allergen Amb family signature 167 183 IPR018082 -
Acco04g1882 433 PRINTS Pollen allergen Amb family signature 108 125 IPR018082 -
Acco04g1882 433 SUPERFAMILY Pectin lyase-like 106 429 IPR011050 -
Acco04g1882 433 Pfam Pectate lyase 170 350 IPR002022 -
Acco04g1882 433 Gene3D - 85 426 IPR012334 -
Acco04g1882 433 SMART amb_all 159 356 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1882 Acco-ChrAcco04 31606809 31609716 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1882 7 433 Polysaccharide Lyase AT5G63180 63.048 0.0 547
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g1882 04 31606809 31609716 Acco04g1882 04 31606809 31609716 ECH
Acco04g1882 04 31606809 31609716 Acco13g0531 13 3823740 3825273 ECH