Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1865 ATGGAAGATGAGGACGAAAGTACTGGGCTTAGAATACATAGGATTTCCCAAGCCAGCCCAAATTCCACAAAGGCTGTCTTGGCGGGAAATTTTGATCAGATGCCAGCTGGAAGCTCCCAGAGTAACACTCATTTGAGTATCGCTGCTATTTCCAATAATCTGCTCCGTTCCGACGGAACAATGGGTTCCGATTCAGACTCAGATGGTTCTCATGTTTCTAATACGCCCCCCAGGGAAGAGCCTCGACCATCCTTGACGGCACAACCGCCGCCACCGCGGTCTAAACCTGTTCTCGTTTCAAACAAATTGAAACTGTGTTCCACGTCCAGTGAGAAATCTTCAAAATCCAAATTACGCCCTTCTAGACCAGCAAAACCGTCATCCAAACAGGAACCTACACAAGAAGAATTTCCCTGTAACTCCTTTTGCCTCCCTACTCTGCCCTTCCAAATTCGTCGACCTTCTGACTGTGTCACTCAACTGTCAACTGCACAATCCTTTGAAACCCTCCCAGCTGGGTATTTCTCCAAATCTGCGTCTTTCTCAAAAATTCGAAGGTCTTTTCTCAGTTTTACAGATTCATCTGAAAATGGACCTCCTCTTGATTTTGTATCTAACCCAGGCCTCAAGAACGAGAGTAATGAGAGTTCTTGTCACTTGGGTGATTCTATTCCAGTTGAAGTAGAGGGCGAAAGTCTAAGAGCAACGAATGTGTCAAAATTAGGAAAGAGACATCCTAATCTGATAGGAGCTAATGTGCCGGTGCCATCTGTTAAGGTTAGAAAATGTGGCGGTGAGGGAAATTTTGTGAGGTTGAACCTGAATAGCAAGAAGTGGAAGTTGCGGAACCATGGAAAAAAGAAAAATTTTGCATATGGTAAGCGTAGAAGTTACAGGAGAGATAAAGTTAAATCGAAGCGTGAAGATCAGGATCAAGTGAAGTCGTTCTTAGAGTCTGAGGGGGATGCATTTGTTGTGCAGACCGCACAAAAGAAATCCAGGGATTCTCGTTGTGCAAAAGAATGTGATTGTAAAGTGATTGAAGAGGTGGTTTCAGTTGTTCGAGAAGACCCATCTGATGAGAATCTGGTGAAGTTGCTACAGTTAGTTTATGGCTATGATTATTTTCGGGATGGTCAATTGGAGGCAATCAAGATGGTACTTGCTGGAAAGTCGACTATGCTTATTTTGCCCACTGGTGCAGGAAAGTCCCTGTGTTATCAGTTACCTGCAATGATTTTACCTGGAATTACCCTGGTCGTCAGTCCACTGGTAGCCTTGATGATTGATCAACATAGAAAATTGCCTCCTATGATTAATGGAGGACTTCTATGCAGCAGTCAGGTGCTTTTTGTTTCACCAGAGAGGTTACTGAATGAAGAATTTTTGTCAGTAGTTTCCACTGCTTCAACTGTATCTCTTGTTGTTGACGAAGCCCATTGTATATCTGAATGGTCACACAATTTTCGCCCTTCATTCATGAGGCTTAGGGCATCTCTTCTCCACAACAAGCTCAATGCAGGTTCTTTTCTGGCAATGACAGCAACTGCTACAACCATAACTTTAAATTCTGTCATGTCTGCTTTGGACATTCCGTGCACAAATCTCATCCAGAAGACACAGTTGACAGACAATTTACATTTATCATCTGAAGCTGATATAATTAGCAAATACTTGAGTGACAATAGTATCTCTGAAAGCTATCATAGCAGTATTCCTGCAAAGGAGCGTAGCTATGTACAGGAGTTGTTTGGTTCCAACATGATCAGAGGGATTGTTGCAACTGTTGCATTTGGCATGGGATTAGACAAAAGGGATGTTGGAGCTGTAATTCATTACAGTCTGCCAGAAAGTCCTGAGCATTACGTTCAGGAGATTGGACGGGCTGGAAGGGATGGGAGGTTGTCGTTTTGCCACCTATTTTATGATGATGAAACATATTTCAAACTCCGTAGTCTAATGTACAGTGATGGAGTAGATGAATATGCAGTGAACAAGTTTCTCTGTGAAGTATTTCCTGCTCACAGGATTTCCACCGGCCAAATATGTTCCTTGATCAAAGAATCTGCTTCACGGAAGTTTGACATGAAGGAAGAGGTGATGCTGACGCTTTTGACCCGCTTGGAGCTGGGTGATGTGCAGTTCCTACGTTTACTTCCACAGATAAATACCACTTCCACTTTGAGTTTTCACAAGACTCCCCCTCCATTACTTGCCCAAAAGGACTCTGCTGTTGCTGCGATACTGAAAAGGTCTGAAAATAAGCAAGGGCTATATGTTTTTGACATGCTCTCTGTGGCTAATGACATGGGAGTTACAGTGGTTGAAATATCAAATCATTTGCACAATCTAAAGTTGCTTGGAGAAGTAACCCTTGAGATGAAGGACTCGGCCTATTGCTATACAATTGTTAAAGCACCAACAGATTTTTTTGCGTTGTCAGAAAATCTGACACGATGGTTATATGAGTTTGAGAGATCAAAGGTACGAAAACTGGATGCAATGTACGATGCGGCATATCATGCAGCAAATATTTGTGATAAGACGCCAGGTTGCAGTGGTTCCAATCACACACCATGCTTGCAAAGTAAAATATTAGATTACTTTGCAGGGGTCGATAATAATTCCTTGTCCAAGAAGTTGGATCAAAGCAGTCCTTTTTTGCGGGCAGATATAAAGGTCTTTCTACAGAGTAATTTACAGGCGAAATTCACACCAAGAGCCATTGCAAGGATAATGCACGGCATTGCAAGCCCAGCCTATCCTTCTGCTGTTTGGTCTAAAACTCATTTCTGGGGAAGGTATAGTCATGTAGACTTTCTGGTGGTGATGGAAGCAGCAAAGGAAGAACTTCAGAATTTTGTTGGGAAAGACAGCTCTAGCCATCCAAGATAA 2895 0.4273 MEDEDESTGLRIHRISQASPNSTKAVLAGNFDQMPAGSSQSNTHLSIAAISNNLLRSDGTMGSDSDSDGSHVSNTPPREEPRPSLTAQPPPPRSKPVLVSNKLKLCSTSSEKSSKSKLRPSRPAKPSSKQEPTQEEFPCNSFCLPTLPFQIRRPSDCVTQLSTAQSFETLPAGYFSKSASFSKIRRSFLSFTDSSENGPPLDFVSNPGLKNESNESSCHLGDSIPVEVEGESLRATNVSKLGKRHPNLIGANVPVPSVKVRKCGGEGNFVRLNLNSKKWKLRNHGKKKNFAYGKRRSYRRDKVKSKREDQDQVKSFLESEGDAFVVQTAQKKSRDSRCAKECDCKVIEEVVSVVREDPSDENLVKLLQLVYGYDYFRDGQLEAIKMVLAGKSTMLILPTGAGKSLCYQLPAMILPGITLVVSPLVALMIDQHRKLPPMINGGLLCSSQVLFVSPERLLNEEFLSVVSTASTVSLVVDEAHCISEWSHNFRPSFMRLRASLLHNKLNAGSFLAMTATATTITLNSVMSALDIPCTNLIQKTQLTDNLHLSSEADIISKYLSDNSISESYHSSIPAKERSYVQELFGSNMIRGIVATVAFGMGLDKRDVGAVIHYSLPESPEHYVQEIGRAGRDGRLSFCHLFYDDETYFKLRSLMYSDGVDEYAVNKFLCEVFPAHRISTGQICSLIKESASRKFDMKEEVMLTLLTRLELGDVQFLRLLPQINTTSTLSFHKTPPPLLAQKDSAVAAILKRSENKQGLYVFDMLSVANDMGVTVVEISNHLHNLKLLGEVTLEMKDSAYCYTIVKAPTDFFALSENLTRWLYEFERSKVRKLDAMYDAAYHAANICDKTPGCSGSNHTPCLQSKILDYFAGVDNNSLSKKLDQSSPFLRADIKVFLQSNLQAKFTPRAIARIMHGIASPAYPSAVWSKTHFWGRYSHVDFLVVMEAAKEELQNFVGKDSSSHPR 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1865 964 Pfam Helicase conserved C-terminal domain 556 632 IPR001650 -
Acco04g1865 964 MobiDBLite consensus disorder prediction 101 137 - -
Acco04g1865 964 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 384 535 IPR014001 -
Acco04g1865 964 MobiDBLite consensus disorder prediction 1 22 - -
Acco04g1865 964 Pfam DEAD/DEAH box helicase 378 518 IPR011545 GO:0003676|GO:0005524
Acco04g1865 964 MobiDBLite consensus disorder prediction 82 96 - -
Acco04g1865 964 Gene3D - 445 541 IPR027417 -
Acco04g1865 964 Gene3D - 352 444 IPR027417 -
Acco04g1865 964 MobiDBLite consensus disorder prediction 55 81 - -
Acco04g1865 964 SMART helicmild6 553 633 IPR001650 -
Acco04g1865 964 Gene3D - 546 699 IPR027417 -
Acco04g1865 964 SMART ultradead3 372 549 IPR014001 -
Acco04g1865 964 PANTHER DNA HELICASE RECQ FAMILY MEMBER 354 814 - -
Acco04g1865 964 MobiDBLite consensus disorder prediction 55 137 - -
Acco04g1865 964 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 384 647 IPR027417 -
Acco04g1865 964 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 528 680 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1865 Acco-ChrAcco04 30955427 30962782 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1865 557 665 Eukaryotic Initiation Factors Gene Family AT3G19760 34.234 3.07e-10 61.6