Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1841 ATGGACAGTGGTTTCTATTCTCCACGACGCAACGCTTTTCCAGCTGGCCTGCGAGTTCTCGTCGTTGATGATGACCCAACATGGATCAGAATCCTTGAAAAGATGCTCAAGAAGTGCTCTTATGAAGTGACCACATGTGGTTTAGCAAGGGAGGCTCTAAACTTGCTTCGGGAAAGAAAAGATGGATATGACATTGTTATCAGTGATGTAAACATGCCAGACATGGATGGTTTTAAACTTCTTGAGCATGTTGGACTTGAGATGGATCTTCCTGTCATAATGATGTCTGTGGATGGAGAAACTAGCAGGGTGATGAAAGGTGTGCAACATGGAGCATGTGATTATCTCCTCAAGCCAATTCGGATGAAAGAACTGCGAAACATATGGCAACATGTGTTCAGAAAGAGGATTCATGAGGCGAGAGAATTTGAAGGTCATGAAGGATTCGAGAGCATTCATTTAATGAGAAATGGATCGGATCAGTCTGAAGATGGGATGTCGTTTTGCCTAGAAGATATGTCCTCCTTGAAGAAAAGAAAAGGCCTCGATAACAACCATGACGACAGAGAATTTGGAGATCCATCTTCCACCAAGAAAGCTAGAGTAGTTTGGTCAGTGGATCTTCATCAGAAATTTGTCAAAGCTGTGAATCAAATTGGATTTGACAAAGTTGGCCCCAAAAGAATTCTAGATTTGATGAATGTTCCTTGGCTGACGAGAGAAAATGTTGCTAGCCATTTGCAGAAATACCGGCTCTACTTGAGTAGGTTGCTGAAAGAAAATGATCAGAGATCTTCTTCAAGTGGGGCCAAGCCTTCAGATTTGCCGCCAAGAGGCACTGCAGGAGATTTTGGATTTCAGAACTTGACAAACAAGCAGCAAAATGATGTTGCAGTTGACAGCTTCAATTATTCGGAGGTAACATTACAGAGTCATTCCTCAGAGACCAAGATTCACGACGGTGATCTCAAGGTGATTGTTTCAGGTTCCATAGCAGAAAAAATAAGAGCTTTATCTGGCAGCATTCCTGATACTAAGGTAAGTCCCCAGATAAGTCTTAACCATTCTTCTTTTGGACCTCTCGAGCCAGAAGGAAGGCATGCGGTATTCGATTGCACCATCCCTTCGACTCAGTTCACCTGGAGCGAAGCTCCCGAAATGCCTCTCAAGAAAGAACACAAGTCATTTCTTCAATTGGAAGATAGCTTCAGTCACTTACCATTACATGTCACACAGCGCAAGATTCAGGGGGACAAATCCCATTCAATTGCTTCTGTTTCTTCGAACCCGAATATAACGGAGAGAGAGATTGCTGCCTCGGTTGAAACTAAGCCGATGTATGCTGATTACAAAAGTGATTATGCCAGTCCTGTGAGTTCAATAGGCAGTGTAGTGGACACAATTCCTACTCAGTCCAAGAGCCTTATGGAGCATGGTCAACTTTCAGAACCTTCTTCGACTAAGAACTTGGCCATGAAAACTCAGGGCTTCAATTCTGACCTCGAATCTTACCCCGAAAACCTATTGGACGAGGACTTTCATTTCTATTGGCTGCAAGGTGAATACTATAACATGAACTGGGGATTGGAGAACACAGGAATGCCAGAGTATTATGATCCAGGTCTTGTTGCTGAACTTTCAAGTCACTTACATGATTCTGCGGATTCTACTCTTGTAGATCAAGGCCTATTCATAGCATAA 1701 0.4303 MDSGFYSPRRNAFPAGLRVLVVDDDPTWIRILEKMLKKCSYEVTTCGLAREALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEAREFEGHEGFESIHLMRNGSDQSEDGMSFCLEDMSSLKKRKGLDNNHDDREFGDPSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKRILDLMNVPWLTRENVASHLQKYRLYLSRLLKENDQRSSSSGAKPSDLPPRGTAGDFGFQNLTNKQQNDVAVDSFNYSEVTLQSHSSETKIHDGDLKVIVSGSIAEKIRALSGSIPDTKVSPQISLNHSSFGPLEPEGRHAVFDCTIPSTQFTWSEAPEMPLKKEHKSFLQLEDSFSHLPLHVTQRKIQGDKSHSIASVSSNPNITEREIAASVETKPMYADYKSDYASPVSSIGSVVDTIPTQSKSLMEHGQLSEPSSTKNLAMKTQGFNSDLESYPENLLDEDFHFYWLQGEYYNMNWGLENTGMPEYYDPGLVAELSSHLHDSADSTLVDQGLFIA 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1841 566 SMART REC_2 17 129 IPR001789 GO:0000160
Acco04g1841 566 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Acco04g1841 566 NCBIfam myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
Acco04g1841 566 Gene3D - 195 258 - -
Acco04g1841 566 SUPERFAMILY Homeodomain-like 197 256 IPR009057 -
Acco04g1841 566 PIRSF RR_ARR_type-B 2 537 IPR017053 GO:0003677|GO:0003700|GO:0009736
Acco04g1841 566 MobiDBLite consensus disorder prediction 261 287 - -
Acco04g1841 566 CDD REC_typeB_ARR-like 19 133 - -
Acco04g1841 566 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Acco04g1841 566 FunFam Two-component response regulator 195 258 - -
Acco04g1841 566 FunFam Two-component response regulator 17 173 - -
Acco04g1841 566 SUPERFAMILY CheY-like 16 141 IPR011006 -
Acco04g1841 566 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
Acco04g1841 566 Gene3D - 17 175 - -
Acco04g1841 566 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 312 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1841 Acco-ChrAcco04 30025297 30029257 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1841 13 265 Response Regulator Gene Family AT2G25180 54.118 1.66e-81 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Acco04g1841 Response_reg 2.1e-24 CL0304