Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1827 ATGGATGCTGCTGAGGTTGAAGAAAATCTGTTTGCAGCAAGTGATGCCAAGTTACATGGAGAAATGTGCAAGGCTCTTTCTACAATGTATTGCAAGGTATCGTCAATATTTCCATCCTTAGAAGCAGCTAGACCTAGGAGCAAAGCAGGCATTGAGGCTTTATGTTCATTGCATGTAGCCCTAGAGAAGGCCAAGAATGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACTTGGCTATAACTGCGGATGTTGTTGTTCTAAAATTCGAGAAGGCTAAATCTGCTATTAAAGATGGCCTTAGGCAGGTGGAAGATATTGTCCCGCAAACTATTGGATGTCATTGTCAGGAGATTGTGAATGAACTCAAAGGCGTAAAATTTGCTCTTGACCCAATGGAGAAGCAAGTTGGTGCTGATTTAATTTCACTGCTTCAGCAAGGGAGACAATGTGGCGACTCTAGTGACGTCAGCGAGCTTGAATGTTTTCACCAGTGTGCTATTAGGCTTGGAATCACATCTTCAAGAGAAGCTCTTATTGAAAGAAGAGCTCTCAAGAAGCTCATTGAGAGAGCTAGAGCTGAGGAAGACAATCAGAAGGAATCAAAAGTTGCTTATCTTCTACACCTCATGAGGAAATATTCCAAGTTATTTAAAATTGAAATTTCAGATGATAATGATTCACAGGGTTCTGCTCCTTGTTCTCCCAGTACTCCTAATACTCAATGTCAGGTGTTCGAAAGAGAGATCTCAAAACGCTTTGCCATGAATTTGAATCCAATCACTAGCAAATTGGGACAGATGCCTCTTCCGCCTGAAGAGTTGAGGTGTCCATTATCTTTGCAGCTTATGTATGATCCTGTCATCATTGTTTCCGGGCATACTTATGAAAGGGTTTGCATTGAGAAATGGTTCGGAGATGGACACAACACTTGCCCCCAGACTCAACAGAAACTTGACCATCTTTTGCTGATTCCGAATTACTGTGTTAAGGGTCTTGTCATTAGTTGGTGTGAACAGAATGGAATTCCTGTTCCTGGTGGCCCTCCTGAATCGTTTGAAATTAACTACTCGAGATTGGTGCTATCAGAACCTGAATCATCAACAAATTCGAAATCTGTCAACAGTTTGAGCTCATGCAAGTTGAAGAGTGTCAAAGTGGTTCCTTCAGAAGAGAGCTGTATCTCAGAGGAAGCCAGGGTGGATAAAAATGAATGTTTGCCTGCAGAGGAGCAAGATACAGAGAAGTGTCTTAGATTTCAGAAAGTTTTGGTTGAAGAGACCAATTACAAGACGAAGTGCAATGTGGTCGAACAGTTAAGGATAATACTGAGGGATAATGAGGAAGCCAGAACTTATATGGGAGCTCATGGATTTGTCGAGGCACTTTTACAGTTTCTAAGGTCTGCTGTGTCTGAAGGGAATCTGAAAGCTCAGGAAAGTGGAGCAATGGCTCTCTTCAACCTTGCTGTGAATAACAACAGAAATAAGGCAATTATGGTATCAGCAGGAGTATTACCACTGCTGGAGGAAATTTCTAATACAAGTTCATATGGTTGTGCAACGGCCCTCTATCTGAATCTCTCTTGCCTTGAAGAAGCTAAGACCAAGATTGGGAAGACTCAGGCTGTCCAGTTCCTAATCCGTCTCCTCCAAGCCAACTCCGAAGTCCAATGCAAGCAAGATTCTCTCCACGCACTCTATAATCTCTCCACTGTCCCTGCAAATATTCCAAACCTCCTCTCATCTGGGATCATCAATGGCCTTCTGTCCCTTCTTTCAGACCAGGGTGATAATAATAGCATGTGGGCAGAGAAATGCATTCCTATTCTGATAAATTTGGCTGCTTCCAGTTTGGGAAAAGAGGAAATAATCTCAACTCCAGGACTCATTAATGCCCTGGCTAGGAAACTAGAATCTTGTGAGCTCTTAGAGCAAGAACAAGCTGTGACTTGTCTCTTAATCTTGTGTAATGGGAATGAGAAATGTAGCCACAAGGTCCTACGAGAAGGTATAATACCTGCATTGGTTTTGATATCAGTAAATGGATCCTCCAGAGGGAAAGAAAAAGCTCAGAAACTCTTGATGCTCTTTAAAGAGCAGCAGCAACGAGATCCTTCACCTGTTAAGACACGTTTGTGTCCCACTACTGCTCTTGAACCTAAGATGAATGTTGCTGTTGTTCCTCAGCCGGAAACGAAACCTGTGATGAGTAAGTCATTGTCTAGAAGAATAATTGAGAAGCATTTTAGATTTTTCACCAAAAGCAAGAGTTATTCTGTTTATCAGATTTAA 2295 0.4196 MDAAEVEENLFAASDAKLHGEMCKALSTMYCKVSSIFPSLEAARPRSKAGIEALCSLHVALEKAKNVLQHCSECSKLYLAITADVVVLKFEKAKSAIKDGLRQVEDIVPQTIGCHCQEIVNELKGVKFALDPMEKQVGADLISLLQQGRQCGDSSDVSELECFHQCAIRLGITSSREALIERRALKKLIERARAEEDNQKESKVAYLLHLMRKYSKLFKIEISDDNDSQGSAPCSPSTPNTQCQVFEREISKRFAMNLNPITSKLGQMPLPPEELRCPLSLQLMYDPVIIVSGHTYERVCIEKWFGDGHNTCPQTQQKLDHLLLIPNYCVKGLVISWCEQNGIPVPGGPPESFEINYSRLVLSEPESSTNSKSVNSLSSCKLKSVKVVPSEESCISEEARVDKNECLPAEEQDTEKCLRFQKVLVEETNYKTKCNVVEQLRIILRDNEEARTYMGAHGFVEALLQFLRSAVSEGNLKAQESGAMALFNLAVNNNRNKAIMVSAGVLPLLEEISNTSSYGCATALYLNLSCLEEAKTKIGKTQAVQFLIRLLQANSEVQCKQDSLHALYNLSTVPANIPNLLSSGIINGLLSLLSDQGDNNSMWAEKCIPILINLAASSLGKEEIISTPGLINALARKLESCELLEQEQAVTCLLILCNGNEKCSHKVLREGIIPALVLISVNGSSRGKEKAQKLLMLFKEQQQRDPSPVKTRLCPTTALEPKMNVAVVPQPETKPVMSKSLSRRIIEKHFRFFTKSKSYSVYQI 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1827 764 PANTHER U BOX DOMAIN-CONTAINING 23 703 - -
Acco04g1827 764 SMART arm_5 531 572 IPR000225 GO:0005515
Acco04g1827 764 SMART arm_5 447 491 IPR000225 GO:0005515
Acco04g1827 764 CDD RING-Ubox_PUB 272 324 IPR045210 -
Acco04g1827 764 SUPERFAMILY RING/U-box 271 347 - -
Acco04g1827 764 Pfam U-box domain 272 341 IPR003613 GO:0004842|GO:0016567
Acco04g1827 764 FunFam RING-type E3 ubiquitin transferase 270 344 - -
Acco04g1827 764 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 344 IPR013083 -
Acco04g1827 764 Coils Coil 175 202 - -
Acco04g1827 764 SUPERFAMILY ARM repeat 410 700 IPR016024 -
Acco04g1827 764 SMART Ubox_2 274 337 IPR003613 GO:0004842|GO:0016567
Acco04g1827 764 Gene3D - 388 706 IPR011989 -
Acco04g1827 764 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 458 504 IPR000225 GO:0005515
Acco04g1827 764 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1827 Acco-ChrAcco04 29445774 29449436 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1827 1 763 U-box Gene Family AT1G24330 60.875 0.0 905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g1827 04 29445774 29449436 Acco04g1827 04 29445774 29449436 ECH