Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1825 ATGACTCATTTTGATCCTTCTTTGGCCTTGAAGCTAGGGCAGAAGCAGCAGCACAAGCCAGCCGCCATGGTGAAGTACTCCAGAGAACCTGACAATCCGACTAAGTCCTGCAAGGCCAGAGGCTCTGACCTTAGAGTTCATTTTAAGAACACTAGGGAGACAGCGTTTGCCGTCAGGAAGTTGCCCTTGGCAAAGGCAAAAAGGTATTTGGAGGATGTGATAGCCCACAAGCAGGCTATTCCCTTCCGAAGGTTCTGTGGCGGTGTTGGGAGGACAGCCCAGGCAAAGAACAGACATTCTAATGGACAAGGACGATGGCCTGTGAAGTCAGCTAAATTCATTCTTGATTTGCTCAAGAATGCAGAGAGTAACGCTGAAGTGAAAGGCTTGGATGTAGATGCTCTCCACATTTCTCACATCCAGGTTAATCAGGCACAGAAGCAAAGACGCAGAACCTATCGTGCTCATGGAAGAATCAACCCCTACATGTCATCTCCATGCCATATAGAGTTGACACTATCTGAAAAAGAAGAGCCTGTGAGGAAGGAGCCGGAGACCCAGTTGGCAACAAGCAAGAAAGCGTAA 585 0.4838 MTHFDPSLALKLGQKQQHKPAAMVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAVRKLPLAKAKRYLEDVIAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALHISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVRKEPETQLATSKKA 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1825 194 Gene3D Ribosomal protein L22/L17 23 194 IPR036394 GO:0003735|GO:0005840|GO:0006412
Acco04g1825 194 MobiDBLite consensus disorder prediction 1 20 - -
Acco04g1825 194 PANTHER 60S RIBOSOMAL PROTEIN L17 23 193 IPR005721 GO:0003735|GO:0006412|GO:0015934
Acco04g1825 194 NCBIfam 50S ribosomal protein L22 26 176 IPR005721 GO:0003735|GO:0006412|GO:0015934
Acco04g1825 194 ProSitePatterns Ribosomal protein L22 signature. 149 173 IPR018260 GO:0003735|GO:0005840|GO:0006412
Acco04g1825 194 MobiDBLite consensus disorder prediction 175 194 - -
Acco04g1825 194 SUPERFAMILY Ribosomal protein L22 23 176 IPR036394 GO:0003735|GO:0005840|GO:0006412
Acco04g1825 194 CDD Ribosomal_L22 37 173 IPR001063 GO:0003735|GO:0005840|GO:0006412
Acco04g1825 194 Hamap 50S ribosomal protein L22 [rplV]. 22 176 IPR005721 GO:0003735|GO:0006412|GO:0015934
Acco04g1825 194 FunFam 60S ribosomal protein L17 23 194 - -
Acco04g1825 194 Pfam Ribosomal protein L22p/L17e 39 173 IPR001063 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1825 Acco-ChrAcco04 29355186 29357856 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1825 23 193 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 88.889 4.98e-114 320