Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1802 ATGGACTGGAATGCTAAGTCTTTCCCACAGTGGGATTGGGAACACCTACTTCTTAACACAAAAGCAACTGAGAATCCTAGGTTAAAGCCGGTTGGTTGGAGTGGCAAAGAAGATGGAGAAATCAATGTTGGCTTGTTCAATCCTTCATGTGGTATTGATTGTTCTGGGTCTGAGCTACTGCATGTGTCTTCATCAAGGGGCTCAAAATCAGCTTCCATGAATTCTCCATCAAATGGGTATAGCAGAACATCAGTGCTCACTTTTGAAGGTTCCCAAGAAGATTCTAATGGTAAAAAAGAGAGGTCAAAAGAAGAGCCTGTTGGAAATTCTCCCTCACTCGAACATTTTTCTGTCTCTGGTGAACCACTGCACAGTCTAAAGCTAGGCAAACGGCTGTACTTTGAAGATGTCTGTGTTGGAAGTGATCCAAAGAACACATCTCACTCTGGGCTTCCCATGCCATCTTTGAGTACTGGCAAAAAGATCAAGTCAAATAGTCAGAGCTCACAGCCTCCACACTGCCAGGTTGAAGGCTGTGACCTTGACCTATCATCAGCTAAAGATTACCATCGCAAGCATAGAGTTTGTGAAAGTCATTCCAAATCACCAAATGTGGTTGTAGATGGTAAGGAACGTCGGTTTTGCCAACAATGTAGCAGGTTCCATGGTCTCTCAGAGTTTGATGGGAAAAAAAGAAGTTGCCGGCATCGTCTTTCCGATCATAATGCTAGGCGTCGGAAGCCTCATCCTGAAGCTGTCCAATTGAATGCATCATTTTTGTCCTCATCACCATACGATGGGAAGCAACAGATGAGCCCATTTTCTAATTCAAGGGCTATCAACTTCGCCTGGCAGGATACATACAGCAGCAGGATCTCCCAAAAGAAAGAATTTCTCATGAAACCTGCAAAAGTAGGAGGTAGCACTGGGCAGATGCATAAGCCCTTCAATGACATCCCCAGTGCCTTTTTGAAGCCTTCTGAAGGTTCTGGTGGCGGCACAGTAACCAAGACAATCAATCCAGGGATAGAAGATTTCATTACCCCATCAGATCTGAATGATCCACAAGATTTTCACCGTGCTCTCTCTCTTCTGTCAACCACCACCTCTTGGGGTCCATTCAACACAAAGCTTGCTTCTCAAGAGCACTCCAATCGCTCGACCCCTACTGGTAAGACTCAGGCTTTATCACACTCAGTGATTCAGTGCTTGCCTTATGCTTCATCAGACTACTGGCAGAATTGTCAACAACCAGTCGACAGCCGTATGGGTGTCTCATACTTGGACTGTAAAGATGACAGTCACTTTGAAGATTTCCAGTTGCTTAGAGAACCCTATGAGTCTGGCTTTTGCAATCAGTTGGATTAA 1368 0.4481 MDWNAKSFPQWDWEHLLLNTKATENPRLKPVGWSGKEDGEINVGLFNPSCGIDCSGSELLHVSSSRGSKSASMNSPSNGYSRTSVLTFEGSQEDSNGKKERSKEEPVGNSPSLEHFSVSGEPLHSLKLGKRLYFEDVCVGSDPKNTSHSGLPMPSLSTGKKIKSNSQSSQPPHCQVEGCDLDLSSAKDYHRKHRVCESHSKSPNVVVDGKERRFCQQCSRFHGLSEFDGKKRSCRHRLSDHNARRRKPHPEAVQLNASFLSSSPYDGKQQMSPFSNSRAINFAWQDTYSSRISQKKEFLMKPAKVGGSTGQMHKPFNDIPSAFLKPSEGSGGGTVTKTINPGIEDFITPSDLNDPQDFHRALSLLSTTTSWGPFNTKLASQEHSNRSTPTGKTQALSHSVIQCLPYASSDYWQNCQQPVDSRMGVSYLDCKDDSHFEDFQLLREPYESGFCNQLD 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1802 455 Gene3D - 164 235 IPR036893 GO:0003677|GO:0005634
Acco04g1802 455 Pfam SBP domain 174 247 IPR004333 GO:0003677
Acco04g1802 455 SUPERFAMILY SBT domain 172 253 IPR036893 GO:0003677|GO:0005634
Acco04g1802 455 MobiDBLite consensus disorder prediction 93 108 - -
Acco04g1802 455 MobiDBLite consensus disorder prediction 65 118 - -
Acco04g1802 455 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 71 366 IPR044817 GO:0003677
Acco04g1802 455 MobiDBLite consensus disorder prediction 65 92 - -
Acco04g1802 455 MobiDBLite consensus disorder prediction 143 174 - -
Acco04g1802 455 MobiDBLite consensus disorder prediction 143 175 - -
Acco04g1802 455 FunFam Squamosa promoter-binding-like protein 14 165 235 - -
Acco04g1802 455 ProSiteProfiles Zinc finger SBP-type profile. 171 248 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1802 Acco-ChrAcco04 27380420 27383038 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1802 1 413 SBP-box Gene Family AT5G43270 38.979 4.88e-60 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Acco04g1802 SBP 5.3e-32 No_clan