Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1798 ATGAGCCTGCTTTATGTAGTTGGATTTGGCCTAAAGTTGGGGCATCTAATCTTGGCGCTGTGTTTCTGGATTATATCAGTCATATACATGAATTGGTTCAACAACGGAGGAATTATGGAAACCAAGGTCGGTTTTCTTGGTGATGGTGGCAGTATGTGGCTCAAATGGTGGGAGAAGATCTCAGGCAATAGTTGTAAAATTCATCAACACTACTATCATCGTATTGGATCCAGGAAAGTTCGGAGAACTCTGTGGAGAAAGCTTTTGCTGACATGGGTACTAGGCTGGACCATGGTATCTTTGTGTATCTTTTTCTTCATGACCTTTCAAGCCACTGAGAAGAGGAAAGAGACTCTGGCAAGTATGTGTGACGAAAGGGCTAGGATGCTTCAGGATCAGTTTAATGTTAGTATGAACCATATCCAAGCCATGTCAATTCTCATCTCAACCTTCCACCATGCGAAGTCCCCTTCTGCCATCGATCAGAGGACATTTGCAAGGTACACAGAACGAACTGCTTTTGAGAGGCCCCTTACTAGTGGTGTTGCTTATGCTGTGAGGGTGCTTCACTCTGAAAGGGAACAGTTCGAGAAGCAACAAGGTTGGACCATTAAGAGGATGGATACCCTTGAGCAGAACCCCATTCATGAGGATGACTATGCCCCTGAAGCATTGGAGCCTTCCCCAGTTCGAGAAGAATATGCTCCTGTCATTTTTGCACAGGAAACAATTTCCCATGTAATTTCTGTTGATGTGCTGTCTGGAAAGGAAGATCGTGAAAATGTTCTGCGTGCTAGAGAGTTAGGGAAAGGAGTTTTAACCGCTCCTTTTAGGCTGCTCAAAACAAATCATCTGGGAGTTATCCTAACTTTCGCAGTGTACAACACAGATCTTCCATCAAATGCAACCCCAAACGAAAGGATTCAAGCGACAAATGGGTATCTTGGAGGCGTCTTTGATATCGAGTCATTGGTTGAAAAATTACTTCAACAACTTGCTAGCAAGCAAACTGTGATCGTCAATGTGTATGATACTACTAATCATACCCACCCTATTCCCATGTATGGTTCAAATGTATCAGATGATGGATTCTATCATGTTAGCTCCCTGAACTTTGGAGATCCGTTCCGGAAGCATGAGATGCACTGCAGGTTCAAACAGAAACCTCCATGGCCATGGTTAGCTTTTTCTTCATCAATTGGCATACTTATTATTGCGCTTCTTGTGGGGCATATTTTTCATGCCACTGTCAATCGAATAGCTAAAGTGGAGGATGACTACCGTGAGATGATGGAACTTAAAAAACGAGCTGAGGCAGCTGATGTTGCAAAATCCCAGTTTCTGGCCACCGTTTCTCATGAGATCAGAACACCAATGAATGGTGTTCTTGGAATGTTGGATATGCTTATGGACACAGATCTAGATGTAACACAGAAAGAATATGTCAGAACAGCACAGGGTAGTGGAAAAGCTCTGGTGTCGCTTATAAATGAGGTTTTGGACCAGGCAAAGATTGAATCTGGCAAGCTTGAGCTTGAGGCAGTGCTATTTGACATCCGAGCAGTTTTGGATGATGTGCTGTCACTATTCTCTGAGAAATCTCAAGCGAAAGGAGTAGAGTTGGCCGTGTATATCTCAGATAAGGTTCCTGAACAGTTAGTGGGTGATCCAGGAAGGTTTCGGCAAATAATTACTAATCTCATGGGCAATTCAATTAAGTTCACGGACAAAGGGCACATATTTGTTACTGTCCATCTTATTGAGGAAGTTGTCAATTCAATTGAAGTTGCAACATCAAAGAATACCTTGAGTGGCTTTCCTGTTGCTGATAGATGTAAAAGCTGGAAAGGATTCAGTTTTCTCAGTCAAGATGGACCTCTGGGTTCTTTCTCATCTTCTTCCCCTGATCGCATTACTCTAATTGTTTCTGTTGAAGATACAGGCGAAGGAATTCCTGAAGAAGCCCAACCACGCATTTTCACTCCATTCATGCAGGTTGGTCCATCTGTCTCCAGGAAACATGGGGGAACTGGTATTGGGCTAAGCATTAGCAAGTGCTTGGTTGGCCTCATGCATGGTGAAATTGGATTTGAGAGCACACCAAAGATTGGATCTACTTTCACATTTACAGCTGTCTTTACCAATGAATCCCCTAGTTCAACTGAGGTTAAAACCCAGCAAATTAACAACCAACCTAACCTTGCATCCTCAGAATTTCAGGGCATGACTGCACTTGTTATAGACCCTAGACCTGTCAGGGCTAAAGTGTTGACATATCACATTAAACGGCTTGGCATTCGTGTTGAAATAGCTTCAGATTTAAATCAAGGTTTGTGTGTCATAAACAATGAGGATATAGTTATTAATATGATCCTAGTTGAACATGAAATCTGGGATACAGATTCTGGCGTTTCATCTCAGTTTATCAATAACATGAGGAAAATTGACCACGGGGTTCCTCCAAAGCTGTTTGTTGTTGTTAATTCTAGTAGCTCTTCCAGAGCAAGTTCCATAACATTGGGTGTTCATAATCCAACTATCATTGTAAAACCTCTGAGAGCAAGTATGCTTGCTGCTACTCTGCAGCGAGCCATGGGTGTTGGGAACAAGGGGAATCCTCGAAATGGGGAGCTTCCAAGTTTGTCTCTCCGCCACCTTTTGCGTGGGAGGAGAATCCTTATTGTAGATGACAATAGTGTGAACCGAACAGTAGCAGCTGGAGCTTTAAAGAAGTATGGAGCTGATGTGGTCTGTGTTAACAGTGGAAAAGATGCCATCTCTATGCTGAAGCCACCCCATCAATTTGATGCCTGTTTTATGGACATTCAAATGCCTGAAATGGATGGGTTTGAAGCTACTAGGAGGATTCGGGATATGGAATACCATGTACACAAAGGAGAAGTGCCTGTGGAAACCTTGGAGAATACTTCAAACTGGCATATACCCATTTTGGCTATGACTGCAGATGTGATTCAGGCAACGCATGAGGAATGCCTGAAGTGTGGCATGGATGGATATGTTTCAAAACCATTTGAAGCTGAACAGCTTTATCGGGAAGTTTCACGGTTTTTCCAATCAACTTCATGA 3087 0.4289 MSLLYVVGFGLKLGHLILALCFWIISVIYMNWFNNGGIMETKVGFLGDGGSMWLKWWEKISGNSCKIHQHYYHRIGSRKVRRTLWRKLLLTWVLGWTMVSLCIFFFMTFQATEKRKETLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKSPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKRMDTLEQNPIHEDDYAPEALEPSPVREEYAPVIFAQETISHVISVDVLSGKEDRENVLRARELGKGVLTAPFRLLKTNHLGVILTFAVYNTDLPSNATPNERIQATNGYLGGVFDIESLVEKLLQQLASKQTVIVNVYDTTNHTHPIPMYGSNVSDDGFYHVSSLNFGDPFRKHEMHCRFKQKPPWPWLAFSSSIGILIIALLVGHIFHATVNRIAKVEDDYREMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTDLDVTQKEYVRTAQGSGKALVSLINEVLDQAKIESGKLELEAVLFDIRAVLDDVLSLFSEKSQAKGVELAVYISDKVPEQLVGDPGRFRQIITNLMGNSIKFTDKGHIFVTVHLIEEVVNSIEVATSKNTLSGFPVADRCKSWKGFSFLSQDGPLGSFSSSSPDRITLIVSVEDTGEGIPEEAQPRIFTPFMQVGPSVSRKHGGTGIGLSISKCLVGLMHGEIGFESTPKIGSTFTFTAVFTNESPSSTEVKTQQINNQPNLASSEFQGMTALVIDPRPVRAKVLTYHIKRLGIRVEIASDLNQGLCVINNEDIVINMILVEHEIWDTDSGVSSQFINNMRKIDHGVPPKLFVVVNSSSSSRASSITLGVHNPTIIVKPLRASMLAATLQRAMGVGNKGNPRNGELPSLSLRHLLRGRRILIVDDNSVNRTVAAGALKKYGADVVCVNSGKDAISMLKPPHQFDACFMDIQMPEMDGFEATRRIRDMEYHVHKGEVPVETLENTSNWHIPILAMTADVIQATHEECLKCGMDGYVSKPFEAEQLYREVSRFFQSTS 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1798 1028 Gene3D CHASE domain 160 389 IPR042240 -
Acco04g1798 1028 SMART HKATPase_4 555 715 IPR003594 -
Acco04g1798 1028 SUPERFAMILY CheY-like 738 866 IPR011006 -
Acco04g1798 1028 CDD HATPase_EvgS-ArcB-TorS-like 560 713 - -
Acco04g1798 1028 FunFam Histidine kinase 4 415 506 - -
Acco04g1798 1028 ProSiteProfiles CHASE domain profile. 156 382 IPR006189 -
Acco04g1798 1028 FunFam Histidine kinase 4 160 389 - -
Acco04g1798 1028 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 555 713 IPR003594 -
Acco04g1798 1028 Gene3D - 732 867 - -
Acco04g1798 1028 CDD REC_hyHK_CKI1_RcsC-like 892 1020 - -
Acco04g1798 1028 Pfam CHASE domain 159 355 IPR006189 -
Acco04g1798 1028 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 428 509 IPR036097 GO:0000155|GO:0007165
Acco04g1798 1028 CDD HisKA 443 504 IPR003661 GO:0000155|GO:0007165
Acco04g1798 1028 Pfam Response regulator receiver domain 892 1019 IPR001789 GO:0000160
Acco04g1798 1028 SMART CHASE_2 156 357 IPR006189 -
Acco04g1798 1028 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 497 710 IPR036890 -
Acco04g1798 1028 Pfam His Kinase A (phospho-acceptor) domain 443 508 IPR003661 GO:0000155|GO:0007165
Acco04g1798 1028 Gene3D - 107 159 - -
Acco04g1798 1028 ProSiteProfiles Response regulatory domain profile. 891 1024 IPR001789 GO:0000160
Acco04g1798 1028 SUPERFAMILY CheY-like 887 1024 IPR011006 -
Acco04g1798 1028 Gene3D - 507 717 IPR036890 -
Acco04g1798 1028 ProSiteProfiles Histidine kinase domain profile. 450 715 IPR005467 -
Acco04g1798 1028 SMART REC_2 890 1020 IPR001789 GO:0000160
Acco04g1798 1028 CDD PRTases_typeI 844 919 IPR000836 -
Acco04g1798 1028 ProSiteProfiles Response regulatory domain profile. 743 865 IPR001789 GO:0000160
Acco04g1798 1028 PANTHER TWO-COMPONENT HISTIDINE KINASE 120 1017 - -
Acco04g1798 1028 PRINTS Bacterial sensor protein C-terminal signature 675 693 IPR004358 GO:0016310|GO:0016772
Acco04g1798 1028 PRINTS Bacterial sensor protein C-terminal signature 640 654 IPR004358 GO:0016310|GO:0016772
Acco04g1798 1028 PRINTS Bacterial sensor protein C-terminal signature 658 668 IPR004358 GO:0016310|GO:0016772
Acco04g1798 1028 PRINTS Bacterial sensor protein C-terminal signature 699 712 IPR004358 GO:0016310|GO:0016772
Acco04g1798 1028 Gene3D - 411 506 - -
Acco04g1798 1028 Gene3D - 885 1027 - -
Acco04g1798 1028 Coils Coil 420 440 - -
Acco04g1798 1028 SMART HisKA_10 443 508 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1798 Acco-ChrAcco04 26711171 26716056 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1798 1 1028 Miscellaneous Gene Families AT1G27320 68.160 0.0 1404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Acco04g1798 CHASE 2e-37 CL0165