Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1787 ATGGACGGTAAAGTTGTGGGAGACTTGAATGGGAATGGAACATTCGCAGTGGAGTCATCAACGACATTTGGATCATCATCAGTTAAGAGAAGCCGAACACCAAGCAGTGGAATCCAGCAAGTTGCATCATGTTTGGTTGACGGATGCAATTCTGACCTTAGTAAATGCAGAGACTATCACAGACGCCACAAGGTTTGTGAACTTCACTCCAAGACCCCTAAGGTCACTGTCAGGGGTCAGGAACAACGCTTCTGCCAGCAGTGCAGCAGGTTCCATTCATTGGAGGAGTTTGACGAAGGAAAGAGAAGCTGCCGGAAACGTCTTGATGGGCACAACCGACGCCGGAGAAAGCCTCCGTCCGTACCCCTGCCATTGACCCCAGCAAGATTTCTTGCTGAATACCCAGGTACTGGAATCTTAGCATTCAACAATTCACTAATACTACCAACAGGGCCTAGTTTGAGCAGTGCTTGGGGTGGGCCTGTTAAAGCTGAGAATAATGATTATTATGTTTCCTTCAAGCTTGATGATGGCAGAAATGGGCCAATTGGGGAACCTTTGAGGAGTGAGCAAGGACTGGGAGGACAGACGCAACTTTCATTTCTCCAAGGCCCCAAATCTTCTACCCCCTATGGATATTCTGCCACTGAACTAATAAATATGGCATCAGATAATAACAACAGCCAGAAAGCATTCTCATATTGTTCTCGCTCTCTTCTGTCATCAATAACACCACCTGAGACTAATGAGCTTGGCTTAAGACGCATGATTCTTCCAAATGCTTTGAACATGGATGCTTCAGAAATAGTGAGCCATGGCTATGATAATACTTCTAATTATGAGGGGATAATGTTTAGTGTTGGATCTGATGGGTCTTCTTCCTCTGCTACTTCCCATAAATTCTTCTCGTGGGAGTAA 918 0.4553 MDGKVVGDLNGNGTFAVESSTTFGSSSVKRSRTPSSGIQQVASCLVDGCNSDLSKCRDYHRRHKVCELHSKTPKVTVRGQEQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPPSVPLPLTPARFLAEYPGTGILAFNNSLILPTGPSLSSAWGGPVKAENNDYYVSFKLDDGRNGPIGEPLRSEQGLGGQTQLSFLQGPKSSTPYGYSATELINMASDNNNSQKAFSYCSRSLLSSITPPETNELGLRRMILPNALNMDASEIVSHGYDNTSNYEGIMFSVGSDGSSSSATSHKFFSWE 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1787 305 SUPERFAMILY SBT domain 42 119 IPR036893 GO:0003677|GO:0005634
Acco04g1787 305 ProSiteProfiles Zinc finger SBP-type profile. 41 118 IPR004333 GO:0003677
Acco04g1787 305 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 25 229 IPR044817 GO:0003677
Acco04g1787 305 Pfam SBP domain 44 117 IPR004333 GO:0003677
Acco04g1787 305 FunFam Squamosa promoter-binding-like protein 14 35 105 - -
Acco04g1787 305 Gene3D - 35 105 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1787 Acco-ChrAcco04 26238120 26239359 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1787 37 159 SBP-box Gene Family AT5G50670 61.290 1.53e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Acco04g1787 SBP 8.5e-31 No_clan