Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1723 ATGCAATTCGCAAAGCTCGATGACTCTCCTATGTTTCGCAAGCAGATGCAATGCCTGGAGGAAGGTTCAGAATCTTTGAGAGAGAGAAGTTTGAAATTTTACAAAGGGTGCAGAAAATACACTGAAGGACTGGGGGAGGCATACGATGGTGACATCGCATTTGCAAGTGCTTTGGAAAGTTTTGGTGGAGGCCATAATGATCCCATCAGTGTTGCTTTTGGAGGCCCTGTTATGACCAAATTCACTATAGCCTTGAGAGAAATTGGGACATACAAAGAAGTCCTTCGGTCACAGGTTGAACATATGCTAAATGACAGATTACTCCAATTTGTGAATATTGACTTGCATGAAGTCAAGAGCATTGCTCCTAAAGAATTAACCTCCTTGAGAGCCATACTCTATGGAAATCACTTCAGCCACTGGGTTGCACCCTCTATGGTTTCTGATATATGGGAACCACCTTTTGTGCAGGAAGCACGCAAGCGTTTTGACAAAGCCAGTCTTATTTATGATCAGGCTCGTGAAAAGTTCCTCTCTTTAAGAAAAGGCACAAAAACAGATGTAGCTACTGCTCTTGAAGAGGAACTTCATAATGCAAGATCCACTTTTGAGCAAGCTCGATTTAATCTGGTTACTGCTTTGTCAACTGTTGAAGCCAAGAAGAGATTTGAATTCTTGGAAGCAGTCAGTGGGACCATGGATGCACATCTTCGCTACTTCAAACAGGGTTATGAGTTATTGCATCAAATGGAGCCGTATATTAACCAGGTCTTGACATATGCTCAGCAGTCAAGAGAAAGATCCAACTATGAGCAGGCAGCTCTAAATGAAAGAATGCAAGAGTACAAAAGGCAGATCGACCGAGAGAGTAGGTGGTCTTCAAATGGTTCTAATGGGTCTCCTAATGGAGATGGTATACAAGCCATCGGCAGAAGTTCACATAAAATGATAGAGGCAGTTATGCAATCTGCTGCCAAGGGAAAGGTTCAAACAATTCGACAAGGTTATCTTTCAAAGCGGTCTTCAAACTTAAGGGGTGACTGGAAAAGGAGGTTTTTTGTTCTTGACAGTCGAGGAATGTTGTATTACTATCGTAAGCAGTGCAGCAAATCTGGGTCTAGCAGTCAACATTCTGCTCAGAGGAATAGTTCTGAGCTTGGTTCTGGCCTCTTGAGCCGATGGCTATCTTCTCATCATCATCACGGTGGGGTACATGATGAAAAATCTGTTGCCCATCACACAGTGAACCTGCTTACATCAACAATCAAAGTTGATGCAGACCAATCAGACTTGAGGTTTTGCTTCAGAATCATTTCACCAACAAAGAACTACACTTTGCAGGCAGAGAGTGCACTGGACCAAATGGATTGGATTGAAAAGATCACAGGTGTTATTGCTTCATTGCTGAGTTCACAGATTCCTGAAAGGTGTCTCCCTGCTAGTCCAATGGGAAGTGGTCATAATAGGTCTGCCAGTGAGAGTAGTTCTTTTGAAAGTTCAGATTTTGATCACTCTGCTGTAGAAGAATATAAATCGGACAGAGGTCTTGCTTCTGCACATATGGATCGCCACTCAAGAAGCTTGCAACTGCAGCAACGAGTATGTATCAAAAGTGAGAAACCAATTGATGTTTTGCGAAGAGTTCATGGAAATGAGATATGTGCTGATTGTGGGGCGCCTGAACCTGATTGGGCATCATTAAATCTCGGTGTTCTTGTTTGCATTGAGTGTTCTGGTGTTCACCGGAATCTTGGTGTACACATATCAAAGGTTAGGTCTCTTACATTGGATGTTAAAGTGTGGGAACCTTCTGTGATAAGTTTGTTTCAATCACTTGGGAATACTTTTGCCAACTCAGTCTGGGAGAAAATGTTGCAATCAAGAAGTGCCTTTCAGATTGATCTTGTCCCCACAGGCTTAAGCAAGTCCGACAAACCACAGGTTCTCTTCATCAGCAAACCTTGTCAATCTGATTCTTTATCTGTGAAGGAAAAGTTCATCCATGCAAAGTATGCAGAGAAGCTTTTTGTTCACAAGCCAAATGACAATCAATATCGTCTCTTTCTGGCGCAACAGATCTGGGAGGCTGTTCGTTCTAATGACAAAAAAGCGGTGTACCACCACATTGTTAATTATGAAGCTGACGTTAATGCTGTTTATGAGCAAACATGCAGCTCTTCTTTAACCCTTGCCAAAGTGATGCTATTACAAGAGCAGACAGGCCATGATCACGAATCTTCTTTAGCAGGGAACTCATTCGACTGGTCCTCTACTCTTTTGAATATGATTGGAGCAAAAGAAGATCCAACCGTGAATGATCTTGATGGGTGCACCTTACTTCACCTTGCTTGTGAAACTGCAGATATTGGCATGCTGGAGCTCCTTCTTCAGTATGGTGCAATTATTAGTGCTACTGACATGAGAGGTCAAACACCTCTCCATCGCTGCATTCTCAAAGGAAAATCTACATTGGCAAGATTACTTCTCTCAAGGGGGGCTGATCCTCAAGCTGTGGATGAAGAGGGAAGAACCCCCCTTGATCTTGCTGTACAGTCAAATTTTGACGACAGTGAAGTGCTTGCTTTATTGTCTGATTCCAACGGATGA 2607 0.4273 MQFAKLDDSPMFRKQMQCLEEGSESLRERSLKFYKGCRKYTEGLGEAYDGDIAFASALESFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQFVNIDLHEVKSIAPKELTSLRAILYGNHFSHWVAPSMVSDIWEPPFVQEARKRFDKASLIYDQAREKFLSLRKGTKTDVATALEEELHNARSTFEQARFNLVTALSTVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRWSSNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSGSSSQHSAQRNSSELGSGLLSRWLSSHHHHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERCLPASPMGSGHNRSASESSSFESSDFDHSAVEEYKSDRGLASAHMDRHSRSLQLQQRVCIKSEKPIDVLRRVHGNEICADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSVWEKMLQSRSAFQIDLVPTGLSKSDKPQVLFISKPCQSDSLSVKEKFIHAKYAEKLFVHKPNDNQYRLFLAQQIWEAVRSNDKKAVYHHIVNYEADVNAVYEQTCSSSLTLAKVMLLQEQTGHDHESSLAGNSFDWSSTLLNMIGAKEDPTVNDLDGCTLLHLACETADIGMLELLLQYGAIISATDMRGQTPLHRCILKGKSTLARLLLSRGADPQAVDEEGRTPLDLAVQSNFDDSEVLALLSDSNG 868
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1723 868 PRINTS HIV Rev interacting protein signature 593 614 IPR001164 GO:0005096
Acco04g1723 868 PRINTS HIV Rev interacting protein signature 551 570 IPR001164 GO:0005096
Acco04g1723 868 PRINTS HIV Rev interacting protein signature 570 587 IPR001164 GO:0005096
Acco04g1723 868 MobiDBLite consensus disorder prediction 479 500 - -
Acco04g1723 868 Pfam BAR domain of APPL family 6 120 IPR004148 GO:0005515|GO:0005737
Acco04g1723 868 Pfam BAR domain of APPL family 156 270 IPR004148 GO:0005515|GO:0005737
Acco04g1723 868 CDD PH_ACAP 333 470 - -
Acco04g1723 868 SMART 5bar 11 256 IPR004148 GO:0005515|GO:0005737
Acco04g1723 868 SMART PH_update 331 468 IPR001849 -
Acco04g1723 868 MobiDBLite consensus disorder prediction 485 500 - -
Acco04g1723 868 ProSiteProfiles ARF GTPase-activating proteins domain profile. 539 684 IPR001164 GO:0005096
Acco04g1723 868 Pfam PH domain 332 465 IPR001849 -
Acco04g1723 868 CDD ArfGap 542 671 - -
Acco04g1723 868 ProSiteProfiles Ankyrin repeat profile. 775 807 IPR002110 GO:0005515
Acco04g1723 868 ProSiteProfiles Ankyrin repeat region circular profile. 775 806 - -
Acco04g1723 868 Gene3D Arfaptin homology (AH) domain/BAR domain 154 288 IPR027267 -
Acco04g1723 868 Gene3D Arfaptin homology (AH) domain/BAR domain 4 130 IPR027267 -
Acco04g1723 868 SUPERFAMILY ArfGap/RecO-like zinc finger 539 679 IPR037278 -
Acco04g1723 868 SUPERFAMILY PH domain-like 272 465 - -
Acco04g1723 868 ProSiteProfiles Ankyrin repeat region circular profile. 808 840 - -
Acco04g1723 868 Gene3D Arf GTPase activating protein 519 682 IPR038508 -
Acco04g1723 868 SUPERFAMILY Ankyrin repeat 693 856 IPR036770 -
Acco04g1723 868 Coils Coil 189 209 - -
Acco04g1723 868 Gene3D - 683 865 IPR036770 -
Acco04g1723 868 ProSiteProfiles Ankyrin repeat profile. 808 840 IPR002110 GO:0005515
Acco04g1723 868 MobiDBLite consensus disorder prediction 285 308 - -
Acco04g1723 868 SMART arf_gap_3 539 684 IPR001164 GO:0005096
Acco04g1723 868 Pfam Ankyrin repeats (3 copies) 765 838 IPR002110 GO:0005515
Acco04g1723 868 Pfam Putative GTPase activating protein for Arf 542 679 IPR001164 GO:0005096
Acco04g1723 868 Coils Coil 156 176 - -
Acco04g1723 868 CDD BAR_SFC_plant 14 253 IPR035670 -
Acco04g1723 868 PANTHER CENTAURIN/ARF 3 866 IPR045258 GO:0005096
Acco04g1723 868 SUPERFAMILY BAR/IMD domain-like 9 256 IPR027267 -
Acco04g1723 868 Coils Coil 265 285 - -
Acco04g1723 868 Gene3D - 323 476 IPR011993 -
Acco04g1723 868 SMART ANK_2a 775 804 IPR002110 GO:0005515
Acco04g1723 868 SMART ANK_2a 841 868 IPR002110 GO:0005515
Acco04g1723 868 SMART ANK_2a 808 837 IPR002110 GO:0005515
Acco04g1723 868 MobiDBLite consensus disorder prediction 291 307 - -
Acco04g1723 868 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 520 685 - -
Acco04g1723 868 ProSiteProfiles PH domain profile. 330 466 IPR001849 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Acco04g1723 Acco-ChrAcco04 23745631 23755710 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1723 551 681 C2H2 Transcription Factor Family AT4G21160 42.424 5.19e-21 93.6