Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1694 ATGGCAATACCTTCTGAGTTTAGCCTTGATTGCAAACCCCACCACAGCTTTTCCATGCTTCTCAAATCTTTTCGACACCATAATCACTTTGATCAGACTCATAACCTCACGCTCGAAGAATTCGTCTCTCGGCTCGAAGAAGAACGCCTCAAGATCGATGCGTTCAAGCGTGAGCTTCCTCTCTGCATGCAACTTCTCATCAACGCTATGGAGGAGTCAAGGCAGAAAATGGAGGATTTGAGAGGAAATGAAGGCCAGAAAAGTGCAACTCTGGAAGAATTCATGCCCTTAAAGCATTCAACTTTTGAAAGCTCTGATAAAGCATCAAGCAATGATAATAATTGTGATAAAGCTAACTGGATGATTTCTGCTCAGCTATGGAGCCAAGCTAGTAAAGAAACCAAGCCACAGTATTCCAAAATCCCATCTCTTATTAACAATAAAGAAGCAGATGATCATCAGATTGTTGGGTTCGATGTTAACCATAACAAGCTTCACAGAAATATCAAAGGTGGAGCCTTTCTTCCATTCACAAATAGTAAGGAACGAAATAGCTCGAACGAGTGTTCTTCGTCGACGCCATTGCAGGCTCTTCCGGAGCTGGCACTTGCCTCTGCTGATGAGAAACAGGCTGAGGAGGACAAGAAATTATACTCGGAGACGATTGAGCATTCTGGTAAAGGAGGAAGCAATAATAATAATAATGGTGGTGATCAAGGAAAAGGAGTTGCCGTAGTTTCTTCGTGTGAGACGAAAACAAACGGTAAAACTACTGCTTTGACGTCCACCAGTACTACGCAAAGTCATCGGAAAACAAGAAGGTGTTGGTCGCCGGACTTGCACCGGCGATTTGTGAATGCTCTTCAGAGGCTTGGTGGATCACAAGTGGCCACCCCAAAACAGATTAGGGAGATGATGAAGGTTGACGGATTGACTAATGATGAAGTCAAAAGTCATCTCCAGAAATATCGGCTCCACACAAGACGACCCGGCCCAAACCCGCAAGTAGGTGGGGCAGGTGCCCCTCAGCTCGTTGTCTTAGGAGGAATCTGGGTCCCACCCGCAACAGGCACCCCTAACGCGCTCTTCAGGCCACACCCAGTCTCTCACGCGCCGCCACCACACTACTTCCCTCACGACCCTCCGCCCCAAGACTTGATGTACACTGCTTCAACACCACAACCACAAAACCACACCCTCCACCACCTCAATGGGTACAAAACGACGTAG 1230 0.4699 MAIPSEFSLDCKPHHSFSMLLKSFRHHNHFDQTHNLTLEEFVSRLEEERLKIDAFKRELPLCMQLLINAMEESRQKMEDLRGNEGQKSATLEEFMPLKHSTFESSDKASSNDNNCDKANWMISAQLWSQASKETKPQYSKIPSLINNKEADDHQIVGFDVNHNKLHRNIKGGAFLPFTNSKERNSSNECSSSTPLQALPELALASADEKQAEEDKKLYSETIEHSGKGGSNNNNNGGDQGKGVAVVSSCETKTNGKTTALTSTSTTQSHRKTRRCWSPDLHRRFVNALQRLGGSQVATPKQIREMMKVDGLTNDEVKSHLQKYRLHTRRPGPNPQVGGAGAPQLVVLGGIWVPPATGTPNALFRPHPVSHAPPPHYFPHDPPPQDLMYTASTPQPQNHTLHHLNGYKTT 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1694 409 Pfam Myb-like DNA-binding domain 273 324 IPR001005 -
Acco04g1694 409 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 268 328 IPR017930 -
Acco04g1694 409 MobiDBLite consensus disorder prediction 224 240 - -
Acco04g1694 409 Coils Coil 63 83 - -
Acco04g1694 409 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 31 366 IPR044787 GO:0003700|GO:0006355
Acco04g1694 409 NCBIfam myb-like DNA-binding domain, SHAQKYF class 271 326 IPR006447 GO:0003677
Acco04g1694 409 SUPERFAMILY Homeodomain-like 269 329 IPR009057 -
Acco04g1694 409 MobiDBLite consensus disorder prediction 221 240 - -
Acco04g1694 409 Coils Coil 38 58 - -
Acco04g1694 409 Gene3D - 270 328 - -
Acco04g1694 409 FunFam Myb family transcription factor 270 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1694 Acco-ChrAcco04 22839648 22842188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1694 1 376 G2-like Transcription Factor Family AT2G03500 47.449 1.72e-96 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Acco04g1694 Myb_DNA-binding 3.5e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g1694 04 22839648 22842188 Acco13g0868 13 6663668 6665943 CCT
Acco04g1694 04 22839648 22842188 Acco04g1694 04 22839648 22842188 ECH