Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1689 ATGTCTCACCCTCTCTGGGAAGCCGATAAAATGTTAGATGTGTATATCCTTGATTATCTCTTGAAGAAAAAACTGCATGCTTCTGCAAGGGCATTTCAGCTTGAGGGGAATGTCTTAACAGATCCTGTAGCTATAGATGCACCAAGCGGTTTTCTTTTGGAGTGGTGGTCTGTCTTCTGGGACATATTTATTGCCAAAACTGCCAGGAAAGACCAAAATCACTCGGAAGCTGCATTATCTTACATTGAGACTCTGCAAACTAAGACTAGAGAGATGCAGAAGCAACAAGAGCATCAAAAACCAAATCAGCTTCAACAAATGCAAATGCAGCAACTTTTGCAGAGGCATGCCCAACAGCAACTACAGCCACAGCAACAGCAATGTAGGGGTGGGATCCAAAATGTCAGAGATAATACCATGGGTCCTCTTGGAAACAATCCTTTGATGAGGCAGAACCATGTGACTGTAAATGCCATGGCATCAAAAACATATGAGGAGAGGTTGAAATTTCCTCTCCAGGGAGAAGCCTTTGATAATGCGCCTGCCAGGCAAAAGATTGGCGGTGCTGCAGGTCAAGTTGTCAGACCAATTAAGGCCTCATTGTTGAAAGCAACAGCATCAGCTACAACAGCAACTGTTGGACATTCTGCGGGTGAAACACTGCATGGTGCACCTAGGGGTTTACCAGGGAATCTTCCACATGTTCAGAGTTGCAACCAGCAACTTGCAGAATCAAATCAAGGCAGTAGCAGTTTGACTCTGAAAGGATGGCCTCTAGCGGGACTGGATCAGCTTTGCTCTGGGTTTCTCCCGCAGAATGCTTTAAAGCAGTCTCCAGAGTCCTTCAATCAACTTTCACTGCAGCAGCAACTTATGCTCCAAGCACAACAAAATTTAGTGGACATGTCTATCAACAATCTGGATGGCTGGACACTTAACATGCTTCTTAGTAATCAAAATATGGGTCCTGAGAAAGATGGCATTCCGAATTCTGTTGGTGATTTAGTTCCTAGTAGTGCAACATCTGTTCATGATTTGCTTGACTCGAACTCGAATACATCATTTAAGCGGCAAGTGCAGCAGAGCAGTCATCAAGTTCAACAATATTCACATTATAATTTTTCTAGCCGGCAGTCTCAGAATCTCGAGCAGCAAGGCAAAATGGTTGGCATTGGCAGCACTCTTAGTATGTTTCAAGGAAATGACCAGGGTTCCAAAAGTCATAGTGGGCGAAAGCGAAAGCAAGCATCATCTTCTGGTCCTGCCAATAGTTCTGGAACTGCAAACACCACAGGGCTTTCCAGTAATTCACCGGCAACACCTTCTACACAAACAGTAGATGAGATGTCAATGTCGGCTCTGCAACAAAATGTTCCTTTGCCCAAATCACCCCTTATGTTTGGTTCTGATGGTCTGGGCTCATTCACATCAGCGCAGAATCAAATGGAAGATATGGACCGCCTTTTAGCTGATGGATCTTTGGGTGACGATGATGCAGACCTTAGAAGTAGATCTGGGAAAGGTATGGTAGCTTCTGATACAGTATCATGCTATAGTCTGCCCTCAATGTTTCAGAGAATAAAACAGGAAAATGCATTTATCTCCCTTAAACTTTATAATTTAATGATTTACTGTGCATTAGGATTCTCGTTCAAGGAGATCAATCATATAATGGCCAGTACGCATCAAATTGAATGCTGCCACTTCTCATCTGATGGAAAGTTGCTTGCTACTGCTGGGCTTGATAAAAAGGCTTCCTTGTGGTGCACTAACTCATTGGATTTGAAGTTGACACTTGAAGGGCATACTGAATGGATAACTGATGTTCGATTTAGTCCCAGCATGTCACACATTGCTACATCCTCAGCTGACAAAACTGTTAGGGTTTGGGATGTTGATAATGTTAGTTATGAACTCTTATCCTTGGTTAAATTGTAA 1938 0.4314 MSHPLWEADKMLDVYILDYLLKKKLHASARAFQLEGNVLTDPVAIDAPSGFLLEWWSVFWDIFIAKTARKDQNHSEAALSYIETLQTKTREMQKQQEHQKPNQLQQMQMQQLLQRHAQQQLQPQQQQCRGGIQNVRDNTMGPLGNNPLMRQNHVTVNAMASKTYEERLKFPLQGEAFDNAPARQKIGGAAGQVVRPIKASLLKATASATTATVGHSAGETLHGAPRGLPGNLPHVQSCNQQLAESNQGSSSLTLKGWPLAGLDQLCSGFLPQNALKQSPESFNQLSLQQQLMLQAQQNLVDMSINNLDGWTLNMLLSNQNMGPEKDGIPNSVGDLVPSSATSVHDLLDSNSNTSFKRQVQQSSHQVQQYSHYNFSSRQSQNLEQQGKMVGIGSTLSMFQGNDQGSKSHSGRKRKQASSSGPANSSGTANTTGLSSNSPATPSTQTVDEMSMSALQQNVPLPKSPLMFGSDGLGSFTSAQNQMEDMDRLLADGSLGDDDADLRSRSGKGMVASDTVSCYSLPSMFQRIKQENAFISLKLYNLMIYCALGFSFKEINHIMASTHQIECCHFSSDGKLLATAGLDKKASLWCTNSLDLKLTLEGHTEWITDVRFSPSMSHIATSSADKTVRVWDVDNVSYELLSLVKL 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1689 645 ProSitePatterns Trp-Asp (WD) repeats signature. 618 632 IPR019775 -
Acco04g1689 645 Pfam WD domain, G-beta repeat 597 631 IPR001680 GO:0005515
Acco04g1689 645 Pfam WD domain, G-beta repeat 560 588 IPR001680 GO:0005515
Acco04g1689 645 SMART Lish 8 40 IPR006594 GO:0005515
Acco04g1689 645 Gene3D - 537 640 IPR015943 GO:0005515
Acco04g1689 645 MobiDBLite consensus disorder prediction 354 445 - -
Acco04g1689 645 Pfam LisH 10 35 IPR006594 GO:0005515
Acco04g1689 645 SUPERFAMILY WD40 repeat-like 551 634 IPR036322 GO:0005515
Acco04g1689 645 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Acco04g1689 645 SMART WD40_4 550 589 IPR001680 GO:0005515
Acco04g1689 645 SMART WD40_4 592 631 IPR001680 GO:0005515
Acco04g1689 645 MobiDBLite consensus disorder prediction 414 445 - -
Acco04g1689 645 MobiDBLite consensus disorder prediction 354 405 - -
Acco04g1689 645 ProSiteProfiles Trp-Asp (WD) repeats profile. 599 634 IPR001680 GO:0005515
Acco04g1689 645 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 599 634 - -
Acco04g1689 645 PANTHER TRANSCRIPTION ACTIVATOR MSS11 88 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1689 Acco-ChrAcco04 22687448 22694937 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Acco04g1689 WD40 1e-07 CL0186