Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1598 ATGAGCAATGGAACCCTCTGCGATGTTCTTCATTCTTCTGCACGACCACCCAATTGGGGTCGTAGAATCCGATTGGCTCTGCAAACTGTAAAGGCCATCGATACCCTTCATTCCTCAACTCCACCTGTAATTCACCGAGACATCAAATCTGCGAATGTGCAGCCAGCAAAAGAGGCAGTGAAACCAAAAGGAGAAGCAGTGAATCCAAAAGCTTACCCTTTGGCAGATGCACAACTCACCATAACTATTTTGGATCTTGTTCAACAAGCTGCCAACTACAAGCTTCTCAAAAAGGGCGCTAATGAAGCAACTAAGACCCTAAACAGGGGTATTTCTGAGTTTATAGTCATGGCAGCAGACGCTGAGCCACTGGAGATTCTTCTCCATCTTCCTCTGCTTGCTGAAGATAAGAATGTGCCTTATGTATTTGTACCATCAATGCAAGCTCTTGGCCGAGCGTGTGGTGTCACCCGGTCTGTTATCTCATGTTCAGTGTTGAGTAGTGAGGGGAGTCAACTAAATTCTCAAGTGGAACAACTCAAGGATGCCATTGAGAAACTTTTAATATGA 570 0.4509 MSNGTLCDVLHSSARPPNWGRRIRLALQTVKAIDTLHSSTPPVIHRDIKSANVQPAKEAVKPKGEAVNPKAYPLADAQLTITILDLVQQAANYKLLKKGANEATKTLNRGISEFIVMAADAEPLEILLHLPLLAEDKNVPYVFVPSMQALGRACGVTRSVISCSVLSSEGSQLNSQVEQLKDAIEKLLI 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1598 189 PRINTS High mobility group-like nuclear protein signature 82 97 IPR002415 GO:0003723|GO:0005730
Acco04g1598 189 PRINTS High mobility group-like nuclear protein signature 99 109 IPR002415 GO:0003723|GO:0005730
Acco04g1598 189 PRINTS High mobility group-like nuclear protein signature 143 155 IPR002415 GO:0003723|GO:0005730
Acco04g1598 189 PRINTS High mobility group-like nuclear protein signature 69 82 IPR002415 GO:0003723|GO:0005730
Acco04g1598 189 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 60 186 - -
Acco04g1598 189 PRINTS Ribosomal protein L7A/RS6 family signature 115 128 IPR018492 -
Acco04g1598 189 PRINTS Ribosomal protein L7A/RS6 family signature 141 155 IPR018492 -
Acco04g1598 189 PRINTS Ribosomal protein L7A/RS6 family signature 96 110 IPR018492 -
Acco04g1598 189 PRINTS Ribosomal protein L7A/RS6 family signature 131 141 IPR018492 -
Acco04g1598 189 ProSiteProfiles Protein kinase domain profile. 1 189 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco04g1598 189 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 84 172 IPR004038 -
Acco04g1598 189 FunFam NHP2-like protein 1 homolog 63 189 - -
Acco04g1598 189 SUPERFAMILY Protein kinase-like (PK-like) 1 53 IPR011009 -
Acco04g1598 189 CDD SNU13 68 189 - -
Acco04g1598 189 Gene3D - 63 189 IPR029064 -
Acco04g1598 189 Gene3D Transferase(Phosphotransferase) domain 1 1 62 - -
Acco04g1598 189 SUPERFAMILY L30e-like 67 187 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1598 Acco-ChrAcco04 19815961 19820279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1598 1 53 MAP Kinase Kinase Kinase AT4G23050 39.623 1.15e-09 55.1