Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1587 ATGGCTTGGTTTAATGAGGGTAACTTCTCGGCCGAGAAGTCGTTTCGCCCGACTCGGCCCTGCTACGTTCCTCCTCACTTCAGGAACAGTGGCATGCCTGATTTCAGCAATGTGAACTCATTCATGTCGGGAAATGGGTCGTCAGCTCAGTCTGGTTTCGCTTCCATCAACTCTTACAGTTCTAGACTACAAGCTAGGGGTGGTGGTGCGAGCAACGGCCGTTTTGGTGGTCGTGGTGGTGGTGGTGGTGGTGGAGGCTGGAGGTTTAGTCGACCGGCGGAGACTGATGAGCGGAACCATTGCCCGAATCGGAACGGTTTTAGGATTCCTGACGCGCTTGACACTAAAGAGAGTTTTGGAGAAGATGGCGATGTCGGTGGTGGTATCAATTTTGACGCGTACGAAGATATTCCAGTGGAGATCGGTGGTTCCGACGTACCCCCGCCAGTCAATACCTTCGCAGAAATAGAGCTGAGCGAGGGTTTGAACAAGAATATCAAGCGTTGCAAGTATTTCAAACCCACTCCAATTCAGCGTCATGCGATTCCCATCGCCGTTGCTGGTCGCGATTTGATGGCTTGTGCTCAGACCGGGTCAGGGAAGACGGCGGCGTTCTGTTTCCCGATTATATCTGGGATTTTGAAGGATCGTTCTAGGTTTTTGCCTACTGCTCGTGAAGGCTGGATTGCTTATCCCACTGCTCTTATAATGTCACCAACTAGGGAGTTGTCATGTCAGATTCATGATGAGGCCAAGAAGTTCGCTCATCAGACCGGAGTGAAGATTGTTGCTGCTTATGGTGGGGCCCCGATTGCTCAGCAGTTTCGTAATTTAGAGAAAGGGGTGGACATCTTAGTTGCTACTCCTGGGCGCTTAGTTGATATGATTGAGAGAGGCAGGGTTTCGCTCGCACGAATAAAATTCCTTGCGCTTGATGAGGCAGATCGCATGTTGGACATGGGCTTTGAGCCTCAAATTCGGAAGATTGTTGAGCAAATGGATATGCCTCCACCAGGTGCTAGACAGACTATGCTCTTCAGTGCTACGTTCCCAGAGGATATACAGAAGCTGGCTGCGGACTTTCTTTCAAACTACATATTCTTAGCAATTGGAAGAGTTGGTTCCAGCACTGAATTGATTGTACAAAAAGTTGAACTTGTTCAGGATATGGACAAAAGAGACCATCTTTTGGATCATCTCCGTTCTCAAAGGGTAAATGGGTTCAATGGAAAGAAAGCTTTGACTCTAGTATTTGTTGAAACAAAGAGAGGAGCAGATGCTTTGGAAAATTGGCTGTGGAGAAAAGGTTTTCCAGCTATTGCAATACATGGTGACAAAGTTCAAGTGGAGAGAGAAAGCGCCTTGAGATCTTTCAAAAGTGGTGCTCGGCCTATTTTGGTCGCAACCGATGTTGCTTCAAGGGGTTTAGACATACCACATGTTGGTCATGTTGTCAATTTTGACTTGCCGAAAGATATAGATGGTTATGTTCACAGAATTGGCCGAACCGGTCGTGCCGGCAAGTCTGGTTTGGCCACTGCTTTCTTCAGTGACAAAAACATCCCTCTTGCAAAGGCCCTTGTTGAACTTATGCAAGAATCAAACCAAGAGGTTCCCTCTTGGCTCACCCAATATGCAGCAGAGAGTTCTTCATACGATATCCGTAGCAGCAAAAGGGGCCAGTGGTATGGTAAAGGCAATTATGGCGGCCATGACTTTAGAAATATGACTCAACATGAAGAAGGGTATCACAACCACTCAGTGGATGCAGGTGTTGTAGAGAACTATGGCACTACAACTGCAGCTTATGACATCTCTGATTCTTCCAATGACTCTTACGATATAGCCAACACTGTTCCTGCTACTAGCAGCAATTTCCATCACAGTGATGCCGGTGCTTATTATGGAGGCGGGAGGGCCGATGGGTTAAACGGGTATGCATCAGTTGTTTCAACTGGGTGGGACTAG 1968 0.4766 MAWFNEGNFSAEKSFRPTRPCYVPPHFRNSGMPDFSNVNSFMSGNGSSAQSGFASINSYSSRLQARGGGASNGRFGGRGGGGGGGGWRFSRPAETDERNHCPNRNGFRIPDALDTKESFGEDGDVGGGINFDAYEDIPVEIGGSDVPPPVNTFAEIELSEGLNKNIKRCKYFKPTPIQRHAIPIAVAGRDLMACAQTGSGKTAAFCFPIISGILKDRSRFLPTAREGWIAYPTALIMSPTRELSCQIHDEAKKFAHQTGVKIVAAYGGAPIAQQFRNLEKGVDILVATPGRLVDMIERGRVSLARIKFLALDEADRMLDMGFEPQIRKIVEQMDMPPPGARQTMLFSATFPEDIQKLAADFLSNYIFLAIGRVGSSTELIVQKVELVQDMDKRDHLLDHLRSQRVNGFNGKKALTLVFVETKRGADALENWLWRKGFPAIAIHGDKVQVERESALRSFKSGARPILVATDVASRGLDIPHVGHVVNFDLPKDIDGYVHRIGRTGRAGKSGLATAFFSDKNIPLAKALVELMQESNQEVPSWLTQYAAESSSYDIRSSKRGQWYGKGNYGGHDFRNMTQHEEGYHNHSVDAGVVENYGTTTAAYDISDSSNDSYDIANTVPATSSNFHHSDAGAYYGGGRADGLNGYASVVSTGWD 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1587 655 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 182 368 IPR014001 -
Acco04g1587 655 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 151 179 IPR014014 GO:0003724
Acco04g1587 655 MobiDBLite consensus disorder prediction 91 111 - -
Acco04g1587 655 MobiDBLite consensus disorder prediction 65 111 - -
Acco04g1587 655 Gene3D - 113 370 IPR027417 -
Acco04g1587 655 SMART ultradead3 170 383 IPR014001 -
Acco04g1587 655 CDD DEADc_DDX3_DDX4 152 374 IPR044763 GO:0003724|GO:0005524
Acco04g1587 655 SMART helicmild6 426 507 IPR001650 -
Acco04g1587 655 CDD SF2_C_DEAD 380 516 - -
Acco04g1587 655 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 119 546 - -
Acco04g1587 655 FunFam Probable ATP-dependent RNA helicase DDX4 115 370 - -
Acco04g1587 655 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 392 546 IPR001650 -
Acco04g1587 655 FunFam ATP-dependent RNA helicase RhlB 371 550 - -
Acco04g1587 655 Pfam DEAD/DEAH box helicase 175 357 IPR011545 GO:0003676|GO:0005524
Acco04g1587 655 Pfam Helicase conserved C-terminal domain 396 507 IPR001650 -
Acco04g1587 655 Gene3D - 371 550 IPR027417 -
Acco04g1587 655 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 233 526 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1587 Acco-ChrAcco04 19632259 19635968 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1587 133 539 Eukaryotic Initiation Factors Gene Family AT3G19760 31.127 8.23e-59 201