LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco04g1571	ATGGACGAAGATTTGCTTAAGCGAAACACCGATTGCGTCTATTTTTTGGCTTCCCCTCTCACTTGCAAAAAGGATTTTATGCGGCTTTCTTTCTTCGTTTCTCCGCTGTTCATTGTTGTGGTTTTATTTAGTGAATCGCTTTCTAGGGGGGCTGATTGTGAGTACCGGCATAATGAAATTGCAAGGCTAAATCCAAGGGATTGCTGGTACTGGTTATCTGGGAGCTGCCTTAATCCAACATGTGCTTTTAGACATCCTCCATTGGAAGGGCATTCTGGAGTGCCATCTGAGTCTACACAATCTTCTTTACCTGAGAACAAGACAGTTCCCTGTTATTTTTTCTTCAATGGATTTTGCAATAAAGGTGACAGATGCTCGTTTTTGCATGGGCCTGATTATAGCTCTTTTCCTGGTAAGCCTGGGAAGAATGAGTCTGGAAGCAATGAAGCCCTGCCCAATGATGCCCTTCCCCCAGAAAATAAAACATCATCTGGAAATAAAGCAGGTGTAGCAATAACAACTGAGACATATCCTGATCCATTTGAAATTGACCCTGTTGAAGATCCTCAGCGATCAGTGCAAAAAAATGTTAAACAGCAAAATACTTTGCGGGAGATATCTGATTATGAATATATAGAAGCCACTGTTATAAGGTCTGACTCTGTATCTCCAGAGAAAGACCATGTTCATAGCATTTCCCATGTATGCACTGATCTGAGTGCAGATGAACATGTGCATAATCATATGGAGCCTGAGGAACGATTGGAATCGTCCCCTGGATTTGATGTTCTTGTTGATGATGAAATGGAGGACCCAGCCTATGAGGATGATTCTGAATATATACCAGTTGATGGTGAACACAGGGAATTGAATGGGCAGTACTTGCAGTATGAATTTAAAGACACTGTTGAGTTTGACCCTGAATGCTCTGAAGCTGACATTATGGATGGGGAGATGTATGGTGGCCGCAGATTTATGGGTGATCATAATCTTGCTGATGGCAGAAAAGTTCCTGCTTTTTCCAGAGAGAGAATCATAGACTCTATAATGTCCAGGAAGAGGATTCAGATGCCAGCTGAACTGACTGCTTGTGACAGGAACTTAGACCTTCGAGACCATCTGAGTAGGCGAAGGGAAATTAATGGTAGGCCTGTTACAGGCTTTTTAAGAAGACAGGGGCCATCTTTTCTGATGACTCAGAACCGAGAAAGGCAGAGAAGACATGGTATTGATCAGCGGCTTAGTAGACGGTTGACGTCTGAGGTGGGATTTAACATTATAGACTCAAATGGAGAGGTTGAAATCCGTTCAATTTCTAATAGGCACAGGTTATTTAGGCACCCTCTGCAACATTCACCAAGGAGGATGCAGCATTATAGAGAAAACCGTAAACAGCAGTTTCTACCCTCTAAAATCTTCAGGAAACCATTTGCAAAGCGAGGGCGATATACTCCTGCTTCTACCAATACTGCATTTCACGGACCTAAGACCCTAGCAGAAATTAAAGAAGAGAAGGCGGCAGCTGCAGAAAGAGGGCTTTTCAACAGTAATTCACCTGATTTCCAGGATCCCAAACCGCTGAGTGAAATTCTCAAGGACAAGAAGAGCTTGGATTGTGAATGA	1623	0.4288	MDEDLLKRNTDCVYFLASPLTCKKDFMRLSFFVSPLFIVVVLFSESLSRGADCEYRHNEIARLNPRDCWYWLSGSCLNPTCAFRHPPLEGHSGVPSESTQSSLPENKTVPCYFFFNGFCNKGDRCSFLHGPDYSSFPGKPGKNESGSNEALPNDALPPENKTSSGNKAGVAITTETYPDPFEIDPVEDPQRSVQKNVKQQNTLREISDYEYIEATVIRSDSVSPEKDHVHSISHVCTDLSADEHVHNHMEPEERLESSPGFDVLVDDEMEDPAYEDDSEYIPVDGEHRELNGQYLQYEFKDTVEFDPECSEADIMDGEMYGGRRFMGDHNLADGRKVPAFSRERIIDSIMSRKRIQMPAELTACDRNLDLRDHLSRRREINGRPVTGFLRRQGPSFLMTQNRERQRRHGIDQRLSRRLTSEVGFNIIDSNGEVEIRSISNRHRLFRHPLQHSPRRMQHYRENRKQQFLPSKIFRKPFAKRGRYTPASTNTAFHGPKTLAEIKEEKAAAAERGLFNSNSPDFQDPKPLSEILKDKKSLDCE	540

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco04g1571	540	PANTHER	ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING	1	539	-	-
	Acco04g1571	540	MobiDBLite	consensus disorder prediction	526	540	-	-
	Acco04g1571	540	SUPERFAMILY	CCCH zinc finger	106	130	IPR036855	GO:0046872
	Acco04g1571	540	ProSiteProfiles	Zinc finger C3H1-type profile.	105	132	IPR000571	GO:0046872
	Acco04g1571	540	Gene3D	-	96	163	-	-
	Acco04g1571	540	Gene3D	-	48	89	-	-
	Acco04g1571	540	ProSiteProfiles	Zinc finger C3H1-type profile.	62	88	IPR000571	GO:0046872
	Acco04g1571	540	Pfam	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	107	131	IPR000571	GO:0046872
	Acco04g1571	540	SMART	c3hfinal6	105	131	IPR000571	GO:0046872
	Acco04g1571	540	SMART	c3hfinal6	64	87	IPR000571	GO:0046872
	Acco04g1571	540	MobiDBLite	consensus disorder prediction	509	540	-	-
	Acco04g1571	540	MobiDBLite	consensus disorder prediction	138	167	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco04g1571	Acco-ChrAcco04	19323684	19326962	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Acco04g1571		zf-CCCH	5e-06	CL0537