Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1569 ATGACTACCTGGGTTGCAAGTAGTGAGGTTCCATCTTATAGGGACACTCGTGACTATAGACTTGCAGTGCGTCGCTACAATAAGCCCTTCAAGGCTGAGCGCAATGAAACTCATCTGCAAAATACTCCATGTAATTCCTCTTATCAATGCAAGAGGCAGTCCCCTTCTAATGCCAAAAGTAATTCATCTCAAATTTGCAAATACTGGATGAATGGAAATTGTGCGTATGGTGATTTTTGTTGGAGCTTGCATTCTTGGTTTCATGGCGAGCACCTCTCTGTGTTCACTAGGCTCAATCAACACAAAAAGATGGTCACTGGGATTACACTTCCCGTTGGATCAGACAAACTTTTTTCCAGTAGCACTAATGGGACACTTAGGATGTGGGACTGTCATACGGGTCAATGTGTTAGTGTAATGAATTTGGGTGATGAAGCAAGGTGTTTGATTAGTATGGACCCTTGGGTTATTGTTGGTATTCGGAATGTTATTAAGGCATGGAACATTCAGACAGCTACTGAGGTCACTCTTGATGGACCAAAGGGTGATGTACTTTTCATGTTTTTTTGCAACAATACACTTTTTGCCGGAGCAATGGATGGTGTTATTTATGCTTGGAGACCAAGTTCTGAAGCAAATTTCCCATTCAAGCCGTTAGCAATGTTGAATGGCCACAACAAAGCTGTCGTTTGTTTAACTGGTGGACGTGGGGACAAGTTGTACTCGGGTTCTATAGATCATAGCATCAAGGACCTCAACACATTACAATGTATGATGATGTTGAAAGGGCACAGTGATGTTGTGACATCCCTTATTTGTTGGGACAAATACTTGTTATCAAGTGCACTGGACGGCACCGTAAAGGTTTGGGGTGCCACTGAGAAAGAAACTTTGGAAGTGGTATACACGCACAATGAAAAAAATGGTGTGGTTAGAATCAATGGTATGGTTGATGCACAAGGAAAACACACATTGTTCTGCTCGTGCAACAACCATTCAGTTGGACTATATGAAATGCCAACGTTTGAGGCGAGAGGAAGATTATTCTCAAAAAAAGAAATTAGAGTAATAGAAGAAAGTCCTGATGGACTCTTTTTCACTGGAGAGGGCACTGGTTCAATCACTATCTGGAAATGGCTGACAGAGTTGGAGCCTGGTGAGATCACATCTCCATAA 1176 0.4209 MTTWVASSEVPSYRDTRDYRLAVRRYNKPFKAERNETHLQNTPCNSSYQCKRQSPSNAKSNSSQICKYWMNGNCAYGDFCWSLHSWFHGEHLSVFTRLNQHKKMVTGITLPVGSDKLFSSSTNGTLRMWDCHTGQCVSVMNLGDEARCLISMDPWVIVGIRNVIKAWNIQTATEVTLDGPKGDVLFMFFCNNTLFAGAMDGVIYAWRPSSEANFPFKPLAMLNGHNKAVVCLTGGRGDKLYSGSIDHSIKDLNTLQCMMMLKGHSDVVTSLICWDKYLLSSALDGTVKVWGATEKETLEVVYTHNEKNGVVRINGMVDAQGKHTLFCSCNNHSVGLYEMPTFEARGRLFSKKEIRVIEESPDGLFFTGEGTGSITIWKWLTELEPGEITSP 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1569 391 SUPERFAMILY WD40 repeat-like 83 305 IPR036322 GO:0005515
Acco04g1569 391 SUPERFAMILY CCCH zinc finger 62 85 IPR036855 GO:0046872
Acco04g1569 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 98 139 IPR001680 GO:0005515
Acco04g1569 391 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 98 130 - -
Acco04g1569 391 ProSiteProfiles Zinc finger C3H1-type profile. 60 87 IPR000571 GO:0046872
Acco04g1569 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 261 300 IPR001680 GO:0005515
Acco04g1569 391 Gene3D - 73 152 IPR015943 GO:0005515
Acco04g1569 391 SMART c3hfinal6 60 86 IPR000571 GO:0046872
Acco04g1569 391 PANTHER - 18 382 IPR044715 -
Acco04g1569 391 Gene3D - 153 390 IPR015943 GO:0005515
Acco04g1569 391 Pfam WD domain, G-beta repeat 256 290 IPR001680 GO:0005515
Acco04g1569 391 Pfam WD domain, G-beta repeat 98 130 IPR001680 GO:0005515
Acco04g1569 391 SMART WD40_4 341 378 IPR001680 GO:0005515
Acco04g1569 391 SMART WD40_4 215 253 IPR001680 GO:0005515
Acco04g1569 391 SMART WD40_4 254 291 IPR001680 GO:0005515
Acco04g1569 391 SMART WD40_4 170 207 IPR001680 GO:0005515
Acco04g1569 391 SMART WD40_4 91 130 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1569 Acco-ChrAcco04 19159272 19161774 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Acco04g1569 WD40 0.00086 CL0186