Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1550 ATGGCTATCACTGTTTTGGCTTGTATGCTATTACTGCAGTTGCCAAGAATTTTTGGCTTTGGGGATTTGTTTCAGTCAAAGGATTGTGGTGTGAATCGGGTCTCCTATTCATGTTCTCATGGTCAAGAACTATTTTACTTAAACGAGAATGTTGTTAGCAAAGACACTTTCTGCAAGACCCTTCAGTTATATATGGCAAATGGTTGTGATGCCAAGTACTATTTTGGAAGTAAAATCTGTGGGCTGGGAGTTTCTTTTGGGAGAAAGCTCTTGCAGACGGATATAAGTGATAACTCAACATTCCCAGGTCACAAGAACGCTTCTATACCCCTATCAGCCTCGAAAGTTGGCATAGCTGCAAGTGGAGCTTTTTTATGTTGTGTTTTTCTTTGTCCTTGTTTCTATGGGAAGAGACAAAAAGCTGCTGCTCAGGCTTCCAAGGACCCAAACTCAATGGATTCTGCTTCCTCATTGGAAGGGAACTCTGTTTCTGAGAAGATCCATGGCTCTGTCCATCGGGTACCACCTAGTCCTTCAAGATTTTCAATGTCTCCAAAACTCAGTAGACTTGGGTCAATACATCTCGACTTGAGTCAGGTTATAAAAGCTACTCATAATTTCTCAAATAAATTACAAATAGGAGAAGGAGGTTTTGGAACTGTCTACAAGGCTCATCTAGAAGGTGGTGAGGTTGTGGCAGTAAAGCGTGCCAAAAGGGAACATTTTGAGAATTTGAGAACTGAATTCAGCAGTGAAGTTGAACTTCTGGCCAAAATTGATCATCGAAACCTGGTGAAGTTACTAGGTTATATTGACCAAGGAAATGAACGCCTTCTTATCGCAGAGTATGTCCCAAATGGTACTCTTAGGGAACATTTGGATGTTTTGCGTGGAAGGATTCTTGACATCAATCAGCGCCTTGAAATTGCCATTGATGTTGCTCATGGCTTGACCTATCTACATCGCTACGCGGGGAAGCCAATTATCCATAGAGATGTGAAATCATCCAACGTTCTTCTCACGGAAAGTATGAGAGCTAAAGTTGCTGATTTTGGATTTGCAAGACTTGGTCCACTGGACTCTGATCAAACACACATCTCTACCAAAGTGAAAGGAACAGTTGGATATTTGGACCCAGAGTACATGAAAACATATCAGCTTACTCCCAAGAGTGATGTTTATTCATTTGGAATTTTGCTTTTAGAAATTGTGACTGGCCGCCGTCCTTTGGAGGTGAAGAAACCCCTTGAAGAAAGGGTGACATTGAGATGGGCTTTCAGAAAGTATAATGAAGGGAATGTGATGGAAATGGCGGATCCTTCGATGGAGGAAGGTATAAATGGAGAGGTTCTGAAGAAGATGATTGGGTTAGCAATTCAATGTGCAGCACCAAGTCGAGCTGATCGGCCAGACATGAAATCGGTGGGAGAACAATTGTGGACGATCAGGGCAGAATTCCTCAAGAGTTCAAAAAGAGTATAG 1482 0.4204 MAITVLACMLLLQLPRIFGFGDLFQSKDCGVNRVSYSCSHGQELFYLNENVVSKDTFCKTLQLYMANGCDAKYYFGSKICGLGVSFGRKLLQTDISDNSTFPGHKNASIPLSASKVGIAASGAFLCCVFLCPCFYGKRQKAAAQASKDPNSMDSASSLEGNSVSEKIHGSVHRVPPSPSRFSMSPKLSRLGSIHLDLSQVIKATHNFSNKLQIGEGGFGTVYKAHLEGGEVVAVKRAKREHFENLRTEFSSEVELLAKIDHRNLVKLLGYIDQGNERLLIAEYVPNGTLREHLDVLRGRILDINQRLEIAIDVAHGLTYLHRYAGKPIIHRDVKSSNVLLTESMRAKVADFGFARLGPLDSDQTHISTKVKGTVGYLDPEYMKTYQLTPKSDVYSFGILLLEIVTGRRPLEVKKPLEERVTLRWAFRKYNEGNVMEMADPSMEEGINGEVLKKMIGLAIQCAAPSRADRPDMKSVGEQLWTIRAEFLKSSKRV 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1550 493 CDD STKc_IRAK 213 479 - -
Acco04g1550 493 Gene3D Transferase(Phosphotransferase) domain 1 284 492 - -
Acco04g1550 493 SUPERFAMILY Protein kinase-like (PK-like) 190 482 IPR011009 -
Acco04g1550 493 ProSiteProfiles Protein kinase domain profile. 207 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco04g1550 493 Gene3D Phosphorylase Kinase; domain 1 178 283 - -
Acco04g1550 493 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 108 485 - -
Acco04g1550 493 Pfam Protein tyrosine and serine/threonine kinase 211 479 IPR001245 GO:0004672|GO:0006468
Acco04g1550 493 ProSitePatterns Protein kinases ATP-binding region signature. 213 235 IPR017441 GO:0005524
Acco04g1550 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 328 340 IPR008271 GO:0004672|GO:0006468
Acco04g1550 493 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 284 493 - -
Acco04g1550 493 SMART serkin_6 207 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1550 Acco-ChrAcco04 18486285 18490155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1550 119 483 Receptor kinase-like Gene Family AT3G46290 40.107 5.02e-75 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Acco04g1550 PK_Tyr_Ser-Thr 5.4e-50 CL0016