LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco04g1538	ATGGATAACAAGACCACCTTCGACTCCGATGTTGTTCTTCTACAATCTATCCGAAACTACCTTCTTGATGAACACTCCGATGCGCTCATTGCATTTCCAGCCACATTCACCGGCGACGCTCCGGTTTGCCTCCAGAGTTCTAGCTCCAGGATGAAGGAGAACAGCAACGGTGAGATCAGCTCTCCATCTTTCTCGCTCGAACAAGAAAACAGTGGCTCCGCCGTACAGGCAGATCTTTGCAGTGCAGATGCAGTGGAGCTTGGAGTTCACGTGCAGCCGAGTGGGAGAGGCTATAGAGGAGTAAGGCGGAGGCCGTGGGGGAAATACGCAGCGGAGATTAGAGATCCGAAGAAGAACGGCGCGAGAGTGTGGCTAGGGACTTATGAGACAGCTGAGGATGCGGCTTTGGCTTATGATCAAGCCGCTTTCAAGATGCGCGGCTCCAAAGCCAAGCTGAATTTTCCTCATCTTATTGGCTCGAATATGTCGGAACCACCAAGAGTGACCGGAAAGCGGCAGTTTCCGGAGCCTTATGAGGAGGAGTCATGGACGGAAGTGAAGAGAGCGAAGAGCCAAGTGAACATATTCATGTGGGATACATAGTTACCTGAAGAAAATCCAAGTTCAAGAGAAAAGACCAATTTAACCATTATGTGGGTGTTCATTGTGCTTTCTCACTATGCGAGACTGGGAATTAATTAA	702	0.4957	MDNKTTFDSDVVLLQSIRNYLLDEHSDALIAFPATFTGDAPVCLQSSSSRMKENSNGEISSPSFSLEQENSGSAVQADLCSADAVELGVHVQPSGRGYRGVRRRPWGKYAAEIRDPKKNGARVWLGTYETAEDAALAYDQAAFKMRGSKAKLNFPHLIGSNMSEPPRVTGKRQFPEPYEEESWTEVKRAKSQVNIFMWDTXLPEENPSSREKTNLTIMWVFIVLSHYARLGIN	233

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco04g1538	233	PRINTS	Ethylene responsive element binding protein signature	121	137	IPR001471	GO:0003700\|GO:0006355
	Acco04g1538	233	PRINTS	Ethylene responsive element binding protein signature	98	109	IPR001471	GO:0003700\|GO:0006355
	Acco04g1538	233	ProSiteProfiles	AP2/ERF domain profile.	97	155	IPR001471	GO:0003700\|GO:0006355
	Acco04g1538	233	SMART	rav1_2	97	161	IPR001471	GO:0003700\|GO:0006355
	Acco04g1538	233	MobiDBLite	consensus disorder prediction	47	67	-	-
	Acco04g1538	233	SUPERFAMILY	DNA-binding domain	97	156	IPR016177	GO:0003677
	Acco04g1538	233	Pfam	AP2 domain	97	147	IPR001471	GO:0003700\|GO:0006355
	Acco04g1538	233	Gene3D	AP2/ERF domain	97	156	IPR036955	GO:0003700\|GO:0006355
	Acco04g1538	233	PANTHER	DNA-BINDING DOMAIN	65	179	IPR044808	GO:0003700\|GO:0009873
	Acco04g1538	233	CDD	AP2	105	157	IPR001471	GO:0003700\|GO:0006355
	Acco04g1538	233	FunFam	Ethylene-responsive transcription factor 2	96	156	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco04g1538	Acco-ChrAcco04	18225544	18226432	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco04g1538	95	194	AP2-EREBP Transcription Factor Family	AT2G44840	68.000	7.02e-44	145

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Acco04g1538		AP2	1e-15	CL0081