Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1509 ATGGGGAAGAAAAAGGAACAAGTGGGAGATAAATCAAGTGATGATGGTGGGAATCCAAGCAAAGGTGGAGATAGTAGCCCCAAAGCGTATGATGAGGATACAATGGTGTTCATATCCATGGCTCAGGAGTTGAAGGATGAAGGGAACAAGCTATTCCAAAAGAGGGACCATGAAGGAGCCTTGATAAAATATGAGAAAGCTCTCAAGTTGATTCCCAAAAATCATATAGATGTGTCATATCTACGGAGTAACATGGCAGCATGCTACATGCAGATGGGACTAGGTGAGTACCCCAGGGCAATACATGAATGCAATTTAGCCCTTGAGGTTACACCAAAATATAGCAAGGCATTGTTGAAGAGGGCAAGGTGCTATGAAGGTTTAAGTAGACTGGATTTGGCTCTAGGAGACGTTAATACCGTTTTGAAGATGGAACCAAATAATATCATGGCATTGGAGATTTCTGAAAGGGTGAAAAAAACACTCGAGGAGAAAGGATTAAGAGTGAATGATACAGTGATTGAGTTGCCTCCAGATTATGTTGAACCTGCCTATGCTTTGCCTTTGGAAAAAGCAGTGAAAGAGAAGACACGCAAGAAGAAGAACAACAAAGTTGAGGTGAAGACCATTGATAATAAAACTGTAGAAAAACAAGATGAGGAGAAATTGGAAGAGAAGAAGGTTGAGGGCAATATTGAGAAGGCTGGGAAGAAGGCTGATGAGAAGAAATCCAAAAGGAAGGCCAAGGAAAAAATTGATGAGAAGAAGGCTGATGTTAAGGAGGTTGTGGAAGAAACAATTAATGGTAGAAGAGATGATATGCCTAAGAAAACAGCAAAACTTGTTTTTGGTGAGGACATAAGATGGGCTGAATTGCCAATTAATTGCACCCTTTTGCAGTTAAGAGAAGTTATTTGTGACCGCTTCCCGAGCCTAGGAGCTGTTCTTGTCAAGTACAGAGATCAAGAAGGTGATTTGGTCACTATCACTTCTGATTCTGAATTGAGATTGGCTGAAACTTCAGCAGGATCACAAGGTTCAATCCGGCTGTACATTGTTGAAGCTACTCCTGAGCAGGATCCACTATTTGAGAAACTTAATAAGGTGGGGGTGCAAAGGTCTCCTATCAGTGAAGCACCTGAGAACGGTTGTGTGTTGAAAGAAAAGGAAGTAATAAATTCATCTTGCATTGAGGATTGGACAATCTGGTTTGCCCAGCTATTCAAAAACCATGTTGGATTTGAATCTGACAGATATTTGAATTTTCATGAGCTTGGGATGAAGCTCTATTCTGAGGCTATGGAGGATACAGTTACAAGTGAAGAAGCACAAGGCTTATTTGACATGGCAGGACATAAGTTCCAAGAGATGACAGCTCTAGCACTGTTCAACTGGGGAAATGTTCACATGTCTAGGGCAAGGAAGAAAGTTTATTTCACTGAAGATTCTTCTAAGAAACATCTCCATGAGCAAATCAAAAGTGCATATGACTGGGCACAGAAAGAATATGAAAAAGCAGGAGAAAAATATGAAGCAGCCATTCAAATAAAATCAGATTTTTATGAAGGGTTTCTGGCGCTGGGGCAGCAACAATTTGAGCAAGCAAAACTTTCTTGGTATTATAATGCAATCAGTAATGGGGCTGATTCGGTGACATGGCCCTCTGCTCATATTCTTCAGCTTTACACCAATGCTGAAGATAATATGGAAAAAGGAATGCAGTTATGGGAACAGTCAGAGGAGCATCGCTTGATTGAAGCCTCTAAATCCAAGGATGTCAAATTGCTTGTACATGACATGGGATTGGATGGAATGTTTAAAAATATGTCAGCAGATGAAATTGCTGCACAGGCTGCAAATATGAGTTCTCAAATAAATCTGCTTTGGGGTACCATGCTATATGAGCGTTCAATTGTGGAATTCAAAGTTGGGTTACCAGTATGGCATGAATCTCTGGAAGTAGCTGTCGAGAAGTTTAAACTTGCCAGAGCTTCTCCGACAGATATAGCTGTGATGTTGAAGAATCACTGTTCAAATAATACGGCTGCAGATGGTCTAGAATTCAAAATTGATGAAATAGTACAAGCATGGAATGAGATGTATGAAGCTAAAAAGTGGCAACGTGGAGTTCCTTCATTTCGCTTGGAAACCTTATTTAGGAGGCGAGTTTCAAAAATCTATCATGCCTTGGAGCTTGTGTGA 2202 0.4055 MGKKKEQVGDKSSDDGGNPSKGGDSSPKAYDEDTMVFISMAQELKDEGNKLFQKRDHEGALIKYEKALKLIPKNHIDVSYLRSNMAACYMQMGLGEYPRAIHECNLALEVTPKYSKALLKRARCYEGLSRLDLALGDVNTVLKMEPNNIMALEISERVKKTLEEKGLRVNDTVIELPPDYVEPAYALPLEKAVKEKTRKKKNNKVEVKTIDNKTVEKQDEEKLEEKKVEGNIEKAGKKADEKKSKRKAKEKIDEKKADVKEVVEETINGRRDDMPKKTAKLVFGEDIRWAELPINCTLLQLREVICDRFPSLGAVLVKYRDQEGDLVTITSDSELRLAETSAGSQGSIRLYIVEATPEQDPLFEKLNKVGVQRSPISEAPENGCVLKEKEVINSSCIEDWTIWFAQLFKNHVGFESDRYLNFHELGMKLYSEAMEDTVTSEEAQGLFDMAGHKFQEMTALALFNWGNVHMSRARKKVYFTEDSSKKHLHEQIKSAYDWAQKEYEKAGEKYEAAIQIKSDFYEGFLALGQQQFEQAKLSWYYNAISNGADSVTWPSAHILQLYTNAEDNMEKGMQLWEQSEEHRLIEASKSKDVKLLVHDMGLDGMFKNMSADEIAAQAANMSSQINLLWGTMLYERSIVEFKVGLPVWHESLEVAVEKFKLARASPTDIAVMLKNHCSNNTAADGLEFKIDEIVQAWNEMYEAKKWQRGVPSFRLETLFRRRVSKIYHALELV 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1509 733 ProSiteProfiles PB1 domain profile. 276 355 IPR000270 GO:0005515
Acco04g1509 733 SMART tpr_5 115 148 IPR019734 GO:0005515
Acco04g1509 733 SMART tpr_5 79 114 IPR019734 GO:0005515
Acco04g1509 733 SMART tpr_5 41 74 IPR019734 GO:0005515
Acco04g1509 733 Gene3D Tetratricopeptide repeat domain 38 169 IPR011990 GO:0005515
Acco04g1509 733 SMART PB1_new 276 355 IPR000270 GO:0005515
Acco04g1509 733 CDD PB1 284 352 - -
Acco04g1509 733 Coils Coil 238 265 - -
Acco04g1509 733 PANTHER PROTEIN CLMP1 3 731 IPR044517 -
Acco04g1509 733 Pfam PB1 domain 278 354 IPR000270 GO:0005515
Acco04g1509 733 Gene3D - 270 355 - -
Acco04g1509 733 SUPERFAMILY TPR-like 41 535 IPR011990 GO:0005515
Acco04g1509 733 SUPERFAMILY CAD & PB1 domains 276 365 - -
Acco04g1509 733 ProSiteProfiles TPR repeat profile. 41 74 IPR019734 GO:0005515
Acco04g1509 733 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1509 Acco-ChrAcco04 17775410 17777721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1509 24 164 Calmodulin-binding Proteins AT3G25230 32.258 1.75e-09 58.9