Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1490 ATGGGTGGAACCAATAGTCGACACGTTTCTCGCCCTTCTTCTCGTCGAGTCGATCACACCAACCGCTTCAGTCTTTCCTCTCTTCTTCCCTGCGGTTCTTCCACTTCTCGCGCTACTTATGAGATTGAAGATCATCCAACTGAACTTCTAGTAGACTCTGCTACAGACTTGAATGACCAAGTTCAGAAAGTTACAGAGGAATCATCTTTGTCGCATTCAACAGAAGCTAGAACTAGAAGCTCACGTGTTGAAACTGGAACCTCCTTTGGTAGCAGTATTCAATCCAGTGAGAATGCCAATCCTCAAGATTCTTCCAGAAGTGTTGCAACTAGCAATCAGAGGGAGTGCTTGTTTAAAAGCAAGGAGTTAGTTCCTCGTCATGAGGTATGTACTTATCATAGTCATAATGAATCTTACAAGGATAGTAGCAACACAGCTAGTACTTCATGTGTAGAACAGCAGTCTTCAGACCCAATCTCTGTTAATGGTTCTGCTAACAAGGATGCAGTTAATGATATTGCTATTTCAGTGGATAGTAGTATCCCTCCAATATCTCATGAGACATTGCATCTAAGGAGTTCATCCCCTCAACTGTATGAAGACCCCAGTTCTCGTGAAAATTATGTTGACAGTCACAGCAGTGGAGCTACAGCTTTCCAGAATTCTGATTCAAATCCCAGTTCTCCAGTCTCAGATTTTCCAGCAACTTCCGTGTTGCAAGAAAATGAATCTCGCGAGACAATTCCTCCAAGTTTAGGGTTTCTTGTTCCCGACAGGGAAAGAGGACATGTAAATGAGAGTGTGCTTCATGTTGATGTGGTTACTATATCTTCCAATACTTTGTCTCATGACAACACTGATGCCATTGATCATAGTGCCAGAAGAAATGGTAGGAGACCATTTTGGGATGCTTTTTCACATCATGGCTCTAGAGGGTTTCGTGTTTCTCCAACCATTCTCTTCTCAGCTGGTGATCCTGATGACGTAGCATCTCATGACCGATGGCTTCTTGATTTGAGCAGTGGTTTCTCAAATGATGAGGCTGGAGAGGATTTTGAATATCTTGGCAGTAGAATCCGCAGATCTAATGCACGAATGCTGCACTCAAGATCTCAGATCTGGGATAGACTTCGTGATGGCCTCAATGAAACTGATCGGTGGACTAATTCTTGTCCGTTAGGACTCCACCCTGATGGCAGGTGTTTCTGTGAGCCTTTCTCCACGACTGAGGAATCTAATACCCGAGCAAGCATGTCAAGAATAGTCATGCTTGCAGAAGCTTTATTTGAGTTTTTAGATGAAATTCATCGCCAACCTGCACCATTTTCACTATCTGTGGCCTCTCTTCCAGCGCCAGAATCAGTTGTTGACTCTTTCCCTCTTAAGTGTCACAAAATGGTTGACACAGCTGATGGTGGTAGTAATACTGAACAATGTCACATATGCCTGGTGGAGTATGAAGAAGGGGACAAAATTCGCGTTCTGCCTTGCAATCATGAGTTCCACATGTCATGCGTTGACAAGTGGCTTAAGGAAATACATGGTATATGTCCTCTCTGTCGTGGAAGTGTTTGTGAAGGAGGTTTCACGGATTCTTCTGTCTCAAACACTCAAGTATAA 1620 0.4346 MGGTNSRHVSRPSSRRVDHTNRFSLSSLLPCGSSTSRATYEIEDHPTELLVDSATDLNDQVQKVTEESSLSHSTEARTRSSRVETGTSFGSSIQSSENANPQDSSRSVATSNQRECLFKSKELVPRHEVCTYHSHNESYKDSSNTASTSCVEQQSSDPISVNGSANKDAVNDIAISVDSSIPPISHETLHLRSSSPQLYEDPSSRENYVDSHSSGATAFQNSDSNPSSPVSDFPATSVLQENESRETIPPSLGFLVPDRERGHVNESVLHVDVVTISSNTLSHDNTDAIDHSARRNGRRPFWDAFSHHGSRGFRVSPTILFSAGDPDDVASHDRWLLDLSSGFSNDEAGEDFEYLGSRIRRSNARMLHSRSQIWDRLRDGLNETDRWTNSCPLGLHPDGRCFCEPFSTTEESNTRASMSRIVMLAEALFEFLDEIHRQPAPFSLSVASLPAPESVVDSFPLKCHKMVDTADGGSNTEQCHICLVEYEEGDKIRVLPCNHEFHMSCVDKWLKEIHGICPLCRGSVCEGGFTDSSVSNTQV 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1490 539 MobiDBLite consensus disorder prediction 1 37 - -
Acco04g1490 539 MobiDBLite consensus disorder prediction 53 69 - -
Acco04g1490 539 FunFam Putative RING zinc finger domain superfamily protein 446 526 - -
Acco04g1490 539 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 538 - -
Acco04g1490 539 Pfam Ring finger domain 478 521 IPR001841 -
Acco04g1490 539 MobiDBLite consensus disorder prediction 52 112 - -
Acco04g1490 539 SMART ring_2 479 520 IPR001841 -
Acco04g1490 539 MobiDBLite consensus disorder prediction 80 112 - -
Acco04g1490 539 MobiDBLite consensus disorder prediction 186 247 - -
Acco04g1490 539 MobiDBLite consensus disorder prediction 186 253 - -
Acco04g1490 539 ProSiteProfiles Zinc finger RING-type profile. 479 521 IPR001841 -
Acco04g1490 539 SUPERFAMILY RING/U-box 473 525 - -
Acco04g1490 539 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 444 525 IPR013083 -
Acco04g1490 539 MobiDBLite consensus disorder prediction 19 37 - -
Acco04g1490 539 MobiDBLite consensus disorder prediction 136 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1490 Acco-ChrAcco04 17415900 17420315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1490 390 525 C3H Transcription Factor Family AT5G45290 53.642 3.33e-42 157