Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1487 ATGCTTCTTGGAGTTCAATCTGCTCGAAGGAGACGCTTCCCTCAGAGCGCGGCGTCCTCTGATTCCCCTTATTTCACCAGACGATCTTCCCTCTGTTTATATTCAAGCAATCGGGAATCCCTTCTTTCCTCTTCTTCTCTCCAGCGAAGAAGCGTATTATACCAGGCGCGCTTGGATGAGAAGCTCACAGGAGCCGCCGGAGAAGCCAAGAAAAGATTGGATGAGAGATTAAGATCAGCTCAGATGAAATCATCTGACAAAAGGCAAAACATCAAAGAGAAGAAGAAAAGCAGAGAGGGAAGACCAGAGCTACACATAGAGGTATACGGATCAAAGAAAAGTGGGATGATGTTCAATTGGAGGAAACTGAGCTGGAAGTCTTCAGATCAAGAGGACTGTGCTGTGTGCTTGGAGTCATTCAAGGTTGGGGATACACTGATCCACCTTCCTTGTGCTCACAAGTTTCATTGCAGCTGCTTGGATCCATGGCTACAAAATAATAGTTATTGCCCATGTTGCAGAACTTCCATTATTATCGCTCACTAG 546 0.4579 MLLGVQSARRRRFPQSAASSDSPYFTRRSSLCLYSSNRESLLSSSSLQRRSVLYQARLDEKLTGAAGEAKKRLDERLRSAQMKSSDKRQNIKEKKKSREGRPELHIEVYGSKKSGMMFNWRKLSWKSSDQEDCAVCLESFKVGDTLIHLPCAHKFHCSCLDPWLQNNSYCPCCRTSIIIAH 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1487 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 179 IPR013083 -
Acco04g1487 181 MobiDBLite consensus disorder prediction 78 102 - -
Acco04g1487 181 Pfam Ring finger domain 132 174 IPR001841 -
Acco04g1487 181 SMART ring_2 133 173 IPR001841 -
Acco04g1487 181 CDD RING-H2_PA-TM-RING 132 174 - -
Acco04g1487 181 SUPERFAMILY RING/U-box 122 179 - -
Acco04g1487 181 ProSiteProfiles Zinc finger RING-type profile. 133 174 IPR001841 -
Acco04g1487 181 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 22 175 - -
Acco04g1487 181 MobiDBLite consensus disorder prediction 1 23 - -
Acco04g1487 181 FunFam Zinc finger family protein 108 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1487 Acco-ChrAcco04 17282645 17283922 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1487 109 177 C3H Transcription Factor Family AT1G04790 41.429 3.46e-17 76.6