Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1452 ATGATGTCAAGAACTGCATTAATGCTCTTTCTTGTTTCTCTTTATCTTCCATTTCAATGTGCAGAAGAACAACTTGAGGTCTTAATCCGCCCATCGGATAAGTGGGACTTCGTTAAATTCTCCGGCAAAGTCAAAGAGAAGAACCCATCCATCAAAACACATCTAACCATTTGGGGAAAAGGAAGTGATACACATACGTCAGTGGTGAGCAATTATTCTTCAAGTTCCTTCATCCGATCTTCACAAAATGTAGCCAGGGCATATGGGTTTGATGGCATCAATCTTTACTGGGATTTCCCTGGAACAGAAAAAGAAATGGATGGTATGGCAAGTCTTTTACAAGAGTGGTGTCAACATGTAGATGCTCATGATCGAGAACTGATGTTAGCTGCCACTGTTGCTTATTCACCATATTGGCCATATAATGAGTCTGTTTATCCTGTTGACTCAATGGCAAGATACTTGAATCTTAAAAACTTTTCTTACATTATTGATCGAAGGACAGATTTCCCTGTCACAGATTCTGCTTTATATGACCCTTCGAGTAATTATAGCACATACTATGGTATCAATAAATGGATTCAAGGGGGGTTGAAGCCTAGCAACGTTTTGGGGTTGGCATTTTTTGGGTATGCATGGAATCTTAGTGATCCTGAAAACAAAACGACAGCTGTGCCGGCGACAGCTGAAGGGGAAGATGATAAAGCTAAACAGGAAGACCACACGTCACGTTTGCTAAAGGGTATATTACCTAATGGTGAGGAAATAGCAGTGAAAAGACGATCAAAAGGTTCCACGCAAGGATTTATAGAATTAAAAAATGAGACAACATTCAATCCAAAACTGCAACATGTCAATCTTGTTCGACTGTTTGGGTTCTGCAATGACAAGGAAGAACAAATGTTGGTTTATGAGTACATGCCAAACAAAAGCCTTGACTTTTATCTCTTTGACCCTACTAAGCAACATCTACTGAATTGGAAACAACGTGTTTGTATTATTGAAGGAGTTACTCAAGGACTCATCTACCTTCAAGAATATTCTAGATTGACAATAATTCATAGAGACTTGAAGGCTAGAAATATTTTATTGGATTATGAGATGAAGCCAAAGATTTCAGACTTTGGCATGGCAAGACCATTCAGAAAAGATGAACCTGAAGAAAGAGCCAGCAAACTTGTAGGGACATATGGCTACATACCTCCAGAGTATGTTGAGAAAGGAATGTGCTCCATTAAAACTGATGTTTACAGTTTTGGTATCATCCTCCTACAAATTATTAGTGGTAAAAGGATCTCTTGCTTATATGGAGAGAACAATGATTTGAACCTCTTAGAATATGCTTACATGCTATGGAAAGAAGGGAAAGTTATGGAATTCATGGATTCTTCACTTCATGATACTTCCTCTCCATGCAAATTGATAAGATGCTTGGAAATTGCTCTCCTCTGTGTCCAGAAAAATGCAGAAGATAGGCCATGCATGCTAGAAGTGGGCTCAATGCTAAGAAACAAAAGCAACTTCACAGCTACCCCAAAATAG 1542 0.3878 MMSRTALMLFLVSLYLPFQCAEEQLEVLIRPSDKWDFVKFSGKVKEKNPSIKTHLTIWGKGSDTHTSVVSNYSSSSFIRSSQNVARAYGFDGINLYWDFPGTEKEMDGMASLLQEWCQHVDAHDRELMLAATVAYSPYWPYNESVYPVDSMARYLNLKNFSYIIDRRTDFPVTDSALYDPSSNYSTYYGINKWIQGGLKPSNVLGLAFFGYAWNLSDPENKTTAVPATAEGEDDKAKQEDHTSRLLKGILPNGEEIAVKRRSKGSTQGFIELKNETTFNPKLQHVNLVRLFGFCNDKEEQMLVYEYMPNKSLDFYLFDPTKQHLLNWKQRVCIIEGVTQGLIYLQEYSRLTIIHRDLKARNILLDYEMKPKISDFGMARPFRKDEPEERASKLVGTYGYIPPEYVEKGMCSIKTDVYSFGIILLQIISGKRISCLYGENNDLNLLEYAYMLWKEGKVMEFMDSSLHDTSSPCKLIRCLEIALLCVQKNAEDRPCMLEVGSMLRNKSNFTATPK 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1452 513 SMART serkin_6 241 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco04g1452 513 Gene3D Transferase(Phosphotransferase) domain 1 308 511 - -
Acco04g1452 513 Pfam Protein tyrosine and serine/threonine kinase 253 500 IPR001245 GO:0004672|GO:0006468
Acco04g1452 513 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 307 510 - -
Acco04g1452 513 SMART 2g34 9 296 IPR011583 GO:0008061
Acco04g1452 513 Pfam Glycosyl hydrolases family 18 37 234 IPR001223 GO:0005975
Acco04g1452 513 ProSiteProfiles Protein kinase domain profile. 198 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco04g1452 513 Gene3D Glycosidases 15 243 - -
Acco04g1452 513 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 246 509 - -
Acco04g1452 513 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 1 513 IPR001223 GO:0005975
Acco04g1452 513 SUPERFAMILY Protein kinase-like (PK-like) 246 502 IPR011009 -
Acco04g1452 513 SUPERFAMILY (Trans)glycosidases 35 217 IPR017853 -
Acco04g1452 513 ProSitePatterns Serine/Threonine protein kinases active-site signature. 352 364 IPR008271 GO:0004672|GO:0006468
Acco04g1452 513 Gene3D Phosphorylase Kinase; domain 1 244 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1452 Acco-ChrAcco04 16788190 16791721 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1452 228 513 Receptor kinase-like Gene Family AT4G11480 48.630 1.15e-90 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Acco04g1452 PK_Tyr_Ser-Thr 8.1e-38 CL0016