Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Acco04g1423 | ATGACTCTGCTGCGCAAATTGTTCTTTCGTAAGCCCCCAGATGGGCTTCTTGAGATCTGTGAGAGAGTTTACGTTTTCGATTGCTGCTTCACGACGGATGCTTGGAATGAAGAAAACTATAAAGTGTACATTGACGGGATTGTCGCTCAACTTCGAGAGCACTTGCCTGATGCTTCGGTCTTGGTCTTCAATTTCCGCCAGGAAGAAACCAAGAGTCAAATGGCTAACATCTTGTCAGAGTATGACATGACTATTATGGACTACCCTCGACAATATGAGGGCTGCCCAGTGCTCAAGATGGAGGTCATCCATCACTTTTTACGGTCGAGTGAAAGTTGGCTCTCACTTGGGCAGCATAATGTTCTGTTGATGCACTGTGAGCGTGGTGGCTGGCCGGTTTTGGCTTTCATGCTGGCTGCACTTTTGATTTATAGAAAGCAATATAGTGGAGAACAAAGGACTTTGGATATGGTTTACAGGCAGGCTCCACGCGAGCTTTTGCAGTTTTTGTCACCTTTAAATCCAATTCCTTGCCAACTGCGGTATCTGCAGTATATTTCCAGGAGGAATGTGGCCATAGAATGGCCTCCATTGGACAGGGCGCTCACGTTGGACTGCATCATTCTCAGATGTTTTCCGAACTTTGATGGGGAAGGTGGATGTTGTCCAGTATTCCGGATTTATGGACAAGATCCTTTTCTTGCTGATAAAACTCCAAAAATCCTGTACTCAACACAGAAGAAACACAAAACCGTCCGATTTTACAAGCAGCAAGAGTGTGAGCTAGTTAAAATTGACATCAACTGTCATATCCAAGGTGATGTTGTGATTGAAAGCATCAACTTGACCAGTGACATGGACCATGAACGGATGATGTTCCGGATCATGTTCAACACAGCTTTTATTAGGTCTAATATATTGATGCTTAACCGAGATGAAGTGGACGTTTTATGGGATGCCAAAGACCATTTCCCCAAGGATTTCAGAGCGGAGATCCTTTTCTCAGAGATGGATGCCGCTGCTGCTGTTATTGCGGATGGTGCCTTATGCTTTGAGGAGAAGGAGGGACTGCCAGTGGAAGCATTTGCCAAAGTCCAGGAGATCTTTAACCATGTGGACTGGTTGAATCCTAAGGCTGATGTTGCACTAAATGTACTCCAACAAATTAGCGCTTCAGTGCATGACCAGTTGGATAGAATTTCTAATCAGCAGCATGATACTGGATCTTTGTTGCATGAAAAAGATCCTAAAGTGCCTCAGGGAAAAAAGAATGAAGCAACAAGATTACTGCCCTTGAAGAATGAATCCCTGGATAGTGATCTGAGTAACACAGTAGATGAACCTATCAAGATTGGTGCTTCTCCACAACTACGTGGAAGCTCTGACAGTGTCTGTCAGAAGGTGCCCATTACATCTATGAGAACCTCAGAGTCCTGTAAACATGTGACAAGTTCTTCAAAGCTTGATGTAAAAGCACAGATGCATGATCTTGCCTTGTCTAGTTCTGCAGATGTTTCTAGTGAATATTTTTCACCAAGAACACCTCCACAGTATCCTTCCTTCGTTAGAAATTCTGATACATCACCCAACACACAATTACCTTCTCGTCTTTCTCCTCTAGGACGAGGTCATCCTGTTACTGGAGAAATTGAAGCCCAATCACAAGACAGAAGCGAGTCATCGATATTTAGTTCGACATCTGGAACTTCATTATCAAGTACCTTTCCAAATAAGTTTCCTCTTGATGCTGCTTCCCATTTTTCAGCTTCATCAATGGCTTCAACTCAGCCGTCTCCTTCCCCTTCAACCCCTCTGAAGGAGATTCTACCTGTTAGAACTATACTTGCTTCATCTGCTTCACAACCTCCAACACCACCCACACCCCCAACTCCTCCTCAAAAGGAGCATAAACTGGTTAGAGCTGTACCTCCCCCACCACCTCCACCTCCACCTCCACAGAAAGATAAATCACTGGTTAGAGTCATTCCTCCTCCACCCCTGCTAAAGGAGGAACGACTTGGACCTCCTCCTTTAGAGGAGGAGCCTAAAGTTAAAACTGGACCACCACCCCCTCCACCACCTCCTCTAAAGGTGGAACCACCTATTAGAGCTAAACCACCACCGCCTCCTCCTCCTCCTCCAAGTCTTCCTAGGAAAGCTGATTCTGCCACAGTATCACCGCTGCCACCTCCCCCTCCCCCTGCTTCAGAACTCTCCTCCAAGCACCCTAATCCTTCGTTGCAGAATTCTACATCTGTTCCTGCTGCTCCTAACGCTCCTCCACCTCCAGTTCCCATTAGTAAAGGAGATCTAAAATCAGGGGATGGAAATATTGCATCTAGTACCACAGTACCCCGAGGACGAATTCTATCTCGTACAATAAATAGTACAAAAAATCAAAATAAAAAGCTGAAGCCATTGCATTGGCTGAAAATCTCTAGAGCAGTGCAAGGAAGTTTGTGGCATGAGGCAGAGAAATCTGGTGAAGCTTCCAAAGCCCCAGAAATTGATATGTCCGAGCTCGAGAGTCTCTTTTCAGCAGCAGTCCCAAGTTCAGGCCCTGCCAAGAAAGTAGGCGTCAAAAGCTCAGCAGTGCCTAAATCTGATAAAGTGCAACTGGTGGAGCACAGAAGAGCATATAATTGTGAAATCATGCTTTCAAAAGTGAAAGTCCCATTGCATGATTTGATGAGCTCAGTGCTAGCACTAGAGGACTCAGCACTAGACGTTGATCAGGTTGAAAACCTTGTAAAGTTTTGTCCTACAAAAGAGGAGATGGAATTACTCAAGGGCTATACTGGAGAAAAGGAGAAATTAGGGAGATGTGAACAGTTCTTCCTAGAGTTGATGAAAGTACCACGGGTAGAGTCCAAACTCAGAGTGTTTTCATTCAAGATTCAGTTCCACTCCCAGGTTTCTGATCTTAGAAAAAGCCTGAATATTGTAGACGCTACTGTAGAAGAGATTAGGAATTCTGTCAAATTGAAGAGAATTATGCAAACAATACTCTCTTTGGGAAATGCTTTGAACCAAGGAACTGCTAGAGGTTCTGCTATTGGATTCAGATTGGATAGCCTTCTTAAACTCACTGAGACGCGAGCACGGAACAACAAGATGACTCTTATGCATTATCTTTGTAAGGTGTTGGCTGACAAATTACCAGAAGTTCTAGACTTCCCCAACGATCTTGCTAACCTAGAGCCTGCTGCAAAGATCCAATTGAAGTTTTTGGCAGAGGAGATGCAAGCTATAAGCAAAGGATTAGAGAGAGTTATCCAGGAACTCTCAATCTCTGAAAATGATGGGCCTGTATCTGAGACATTCTGCAAGACTTTGAAAGTTTTCCTCCGTTCTGCTGAGGCTGAAGTCCGATCACTGGCATCATTATATTCTGGCGTGGGTAGGAAAGTGGACGCGTTGATCTTTTATTTTGGTGAAGATCCAGCTCGCTGCCCATTTGAGCAAGTTGTGTCAACTTTGCTCAACTTCACAAGGATGTTCTACAAAGCCCATGAAGAAAACTGCAAGCAGCTTGAGCTTGAAGTGAAGAAATCATCTGATACTGAGAAAAAGACTCGTGAATCACAAAGGATATTGCCTTCAGCAATCCGGACCGGCAACGTCAAGTGA | 3630 | 0.4449 | MTLLRKLFFRKPPDGLLEICERVYVFDCCFTTDAWNEENYKVYIDGIVAQLREHLPDASVLVFNFRQEETKSQMANILSEYDMTIMDYPRQYEGCPVLKMEVIHHFLRSSESWLSLGQHNVLLMHCERGGWPVLAFMLAALLIYRKQYSGEQRTLDMVYRQAPRELLQFLSPLNPIPCQLRYLQYISRRNVAIEWPPLDRALTLDCIILRCFPNFDGEGGCCPVFRIYGQDPFLADKTPKILYSTQKKHKTVRFYKQQECELVKIDINCHIQGDVVIESINLTSDMDHERMMFRIMFNTAFIRSNILMLNRDEVDVLWDAKDHFPKDFRAEILFSEMDAAAAVIADGALCFEEKEGLPVEAFAKVQEIFNHVDWLNPKADVALNVLQQISASVHDQLDRISNQQHDTGSLLHEKDPKVPQGKKNEATRLLPLKNESLDSDLSNTVDEPIKIGASPQLRGSSDSVCQKVPITSMRTSESCKHVTSSSKLDVKAQMHDLALSSSADVSSEYFSPRTPPQYPSFVRNSDTSPNTQLPSRLSPLGRGHPVTGEIEAQSQDRSESSIFSSTSGTSLSSTFPNKFPLDAASHFSASSMASTQPSPSPSTPLKEILPVRTILASSASQPPTPPTPPTPPQKEHKLVRAVPPPPPPPPPPQKDKSLVRVIPPPPLLKEERLGPPPLEEEPKVKTGPPPPPPPPLKVEPPIRAKPPPPPPPPPSLPRKADSATVSPLPPPPPPASELSSKHPNPSLQNSTSVPAAPNAPPPPVPISKGDLKSGDGNIASSTTVPRGRILSRTINSTKNQNKKLKPLHWLKISRAVQGSLWHEAEKSGEASKAPEIDMSELESLFSAAVPSSGPAKKVGVKSSAVPKSDKVQLVEHRRAYNCEIMLSKVKVPLHDLMSSVLALEDSALDVDQVENLVKFCPTKEEMELLKGYTGEKEKLGRCEQFFLELMKVPRVESKLRVFSFKIQFHSQVSDLRKSLNIVDATVEEIRNSVKLKRIMQTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKVLADKLPEVLDFPNDLANLEPAAKIQLKFLAEEMQAISKGLERVIQELSISENDGPVSETFCKTLKVFLRSAEAEVRSLASLYSGVGRKVDALIFYFGEDPARCPFEQVVSTLLNFTRMFYKAHEENCKQLELEVKKSSDTEKKTRESQRILPSAIRTGNVK | 1209 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Acco04g1423 | 1209 | MobiDBLite | consensus disorder prediction | 616 | 797 | - | - | |
| Acco04g1423 | 1209 | MobiDBLite | consensus disorder prediction | 404 | 426 | - | - | |
| Acco04g1423 | 1209 | MobiDBLite | consensus disorder prediction | 1183 | 1197 | - | - | |
| Acco04g1423 | 1209 | ProSiteProfiles | C2 tensin-type domain profile. | 199 | 337 | IPR014020 | - | |
| Acco04g1423 | 1209 | Gene3D | Formin, FH2 domain | 790 | 1178 | IPR042201 | - | |
| Acco04g1423 | 1209 | SMART | PTEN_C2_2 | 197 | 336 | IPR014020 | - | |
| Acco04g1423 | 1209 | MobiDBLite | consensus disorder prediction | 408 | 422 | - | - | |
| Acco04g1423 | 1209 | SMART | it6_source | 794 | 1209 | IPR015425 | - | |
| Acco04g1423 | 1209 | MobiDBLite | consensus disorder prediction | 551 | 573 | - | - | |
| Acco04g1423 | 1209 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 201 | 337 | IPR035892 | - | |
| Acco04g1423 | 1209 | Pfam | C2 domain of PTEN tumour-suppressor protein | 200 | 336 | IPR014020 | - | |
| Acco04g1423 | 1209 | PANTHER | FORMIN-J | 1 | 695 | - | - | |
| Acco04g1423 | 1209 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 12 | 187 | IPR029021 | - | |
| Acco04g1423 | 1209 | MobiDBLite | consensus disorder prediction | 740 | 754 | - | - | |
| Acco04g1423 | 1209 | Gene3D | Protein tyrosine phosphatase superfamily | 15 | 198 | IPR029021 | - | |
| Acco04g1423 | 1209 | Gene3D | - | 199 | 340 | - | - | |
| Acco04g1423 | 1209 | MobiDBLite | consensus disorder prediction | 502 | 537 | - | - | |
| Acco04g1423 | 1209 | MobiDBLite | consensus disorder prediction | 1183 | 1209 | - | - | |
| Acco04g1423 | 1209 | MobiDBLite | consensus disorder prediction | 681 | 739 | - | - | |
| Acco04g1423 | 1209 | Pfam | Formin Homology 2 Domain | 796 | 1167 | IPR015425 | - | |
| Acco04g1423 | 1209 | MobiDBLite | consensus disorder prediction | 774 | 797 | - | - | |
| Acco04g1423 | 1209 | MobiDBLite | consensus disorder prediction | 621 | 659 | - | - | |
| Acco04g1423 | 1209 | Coils | Coil | 1168 | 1188 | - | - | |
| Acco04g1423 | 1209 | MobiDBLite | consensus disorder prediction | 502 | 573 | - | - | |
| Acco04g1423 | 1209 | ProSiteProfiles | Formin homology-2 (FH2) domain profile. | 794 | 1193 | IPR015425 | - | |
| Acco04g1423 | 1209 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 729 | 1183 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Acco04g1423 | Acco-ChrAcco04 | 16011603 | 16022872 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Acco04g1423 | 754 | 1191 | Protein tyrosine phosphatase (PTP) family | AT5G58160 | 69.178 | 0.0 | 610 |